RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 MRPS5P82675 430 aaKnown RBP13.56□□□□□ -0.24
USP40-210ENST00000454354 PPP2R5CQ13362 524 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 XKR3Q5GH77 459 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 ODR4Q5SWX8 454 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 NPAS4Q8IUM7 802 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 TMEM192Q8IY95 271 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 CLP1Q92989 425 aaKnown RBP13.56□□□□□ -0.24
USP40-210ENST00000454354 ASB2Q96Q27 587 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 CEP89Q96ST8 783 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 NIFKQ9BYG3 293 aaKnown RBP13.56□□□□□ -0.24
USP40-210ENST00000454354 BRMS1Q9HCU9 246 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 NOC2LQ9Y3T9 749 aaKnown RBP13.56□□□□□ -0.24
USP40-210ENST00000454354 FAM205CA6NFA0 338 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 H3BNC9 293 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 MGEA5O60502 916 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 CCNT1O60563 726 aaKnown RBP13.55□□□□□ -0.24
USP40-210ENST00000454354 JAK2O60674 1132 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 RPS6KA5O75582 802 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 MMP1P03956 469 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 VTNP04004 478 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 TMOD1P28289 359 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 NR5A1Q13285 461 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 KIZQ2M2Z5 673 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 TMEM266Q2M3C6 531 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 EFCAB12Q6NXP0 572 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 TRMT1LQ7Z2T5 733 aaKnown RBP13.55□□□□□ -0.24
USP40-210ENST00000454354 FAM228AQ86W67 206 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 FIBCD1Q8N539 461 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 METTL13Q8N6R0 699 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 HAS1Q92839 578 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 MAP7D2Q96T17 732 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 OSMRQ99650 979 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 ADAMTS10Q9H324 1103 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 COG5Q9UP83 839 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 GINS2Q9Y248 185 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 RWDD3Q9Y3V2 267 aa13.55□□□□□ -0.24
USP40-210ENST00000454354 IGKV6-21A0A0C4DH24 114 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 EML1O00423 815 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 GPR182O15218 404 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 RB1P06400 928 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 STAG3L1P0CL83 205 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 SARSP49591 514 aaKnown RBP13.54□□□□□ -0.24
USP40-210ENST00000454354 PSMC5P62195 406 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 TBC1D8BQ0IIM8 1120 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 NFX1Q12986 1120 aaKnown RBP13.54□□□□□ -0.24
USP40-210ENST00000454354 CMTR2Q8IYT2 770 aaKnown RBP13.54□□□□□ -0.24
USP40-210ENST00000454354 LRRC71Q8N4P6 559 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 MRPL38Q96DV4 380 aaKnown RBP13.54□□□□□ -0.24
USP40-210ENST00000454354 KIF2CQ99661 725 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 RGS18Q9NS28 235 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 C1orf112Q9NSG2 853 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 SEPT9Q9UHD8 586 aaPredicted RBP13.54□□□□□ -0.24
USP40-210ENST00000454354 ST3GAL5Q9UNP4 418 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 LIMCH1Q9UPQ0 1083 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 AKT3Q9Y243 479 aa13.54□□□□□ -0.24
USP40-210ENST00000454354 CTNNB1P35222 781 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 GPC3P51654 580 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 NLRP11P59045 1033 aaKnown RBP13.53□□□□□ -0.24
USP40-210ENST00000454354 SPIRE1Q08AE8 756 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 GPM6BQ13491 265 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 BTG3Q14201 252 aaPredicted RBP13.53□□□□□ -0.24
USP40-210ENST00000454354 DSC3Q14574 896 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 SKIV2LQ15477 1246 aaKnown RBP13.53□□□□□ -0.24
USP40-210ENST00000454354 AAK1Q2M2I8 961 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 TIGD5Q53EQ6 642 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 ANO5Q75V66 913 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 DIS3L2Q8IYB7 885 aaKnown RBP13.53□□□□□ -0.24
USP40-210ENST00000454354 BANK1Q8NDB2 785 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 PPP1R16BQ96T49 567 aa13.53□□□□□ -0.24
USP40-210ENST00000454354 RNF216Q9NWF9 866 aaPredicted RBP13.53□□□□□ -0.24
USP40-210ENST00000454354 DENND3A2RUS2 1198 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 BTBD18B2RXH4 712 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 C9IYK1 514 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 DKC1O60832 514 aaKnown RBP eCLIP13.52□□□□□ -0.25
USP40-210ENST00000454354 P4HBP07237 508 aaKnown RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 EIF4BP23588 611 aaKnown RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 BMPR1AP36894 532 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 QARSP47897 775 aaKnown RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 RBM25P49756 843 aaKnown RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 TFF2Q03403 129 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 TRIM29Q14134 588 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 PTPROQ16827 1216 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 MTERF2Q49AM1 385 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 SLC24A5Q71RS6 500 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 SLFN12Q8IYM2 578 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 HLA-CQ95604 372 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 ADAM2Q99965 735 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 LLPHQ9BRT6 129 aaKnown RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 C11orf84Q9BUA3 381 aaPredicted RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 PLVAPQ9BX97 442 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 PPME1Q9Y570 386 aa13.52□□□□□ -0.25
USP40-210ENST00000454354 MRPL42Q9Y6G3 142 aaKnown RBP13.52□□□□□ -0.25
USP40-210ENST00000454354 TMEM150BA6NC51 233 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 MAFO75444 373 aaPredicted RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 BAG4O95429 457 aaKnown RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 DARSP14868 501 aaKnown RBP13.51□□□□□ -0.25
USP40-210ENST00000454354 FAM189BP81408 668 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 CDC42EP1Q00587 391 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 DRP2Q13474 957 aa13.51□□□□□ -0.25
USP40-210ENST00000454354 EPHA7Q15375 998 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms