RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 USP10Q14694 798 aaKnown RBP5.62□□□□□ -1.51
USP40-209ENST00000452724 ICAM4Q14773 271 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 CC2D1AQ6P1N0 951 aaPredicted RBP5.62□□□□□ -1.51
USP40-209ENST00000452724 STRA8Q7Z7C7 330 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 AFAP1L2Q8N4X5 818 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 DNERQ8NFT8 737 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 CHTF18Q8WVB6 975 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 USP7Q93009 1102 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 CARD11Q9BXL7 1154 aa5.62□□□□□ -1.51
USP40-209ENST00000452724 H2AFY2Q9P0M6 372 aaPredicted RBP5.62□□□□□ -1.51
USP40-209ENST00000452724 RASSF10A6NK89 507 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 BPIP17213 487 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 SLC9A1P19634 815 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 AOAHP28039 575 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 POLD1P28340 1107 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 CSF2RBP32927 897 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 ADCYAP1R1P41586 468 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 LSSP48449 732 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 KPNA1P52294 538 aaPredicted RBP5.61□□□□□ -1.51
USP40-209ENST00000452724 OCRLQ01968 901 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 CATSPEREQ5SY80 951 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 EFHBQ8N7U6 833 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 WDR48Q8TAF3 677 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 SH3RF3Q8TEJ3 882 aaPredicted RBP5.61□□□□□ -1.51
USP40-209ENST00000452724 ASB15Q8WXK1 588 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 GPR101Q96P66 508 aaPredicted RBP5.61□□□□□ -1.51
USP40-209ENST00000452724 LMF1Q96S06 567 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 ELF4Q99607 663 aaPredicted RBP5.61□□□□□ -1.51
USP40-209ENST00000452724 KATNBL1Q9H079 304 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 SLC39A2Q9NP94 309 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 ACSS2Q9NR19 701 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 SPO11Q9Y5K1 396 aa5.61□□□□□ -1.51
USP40-209ENST00000452724 PATE3B3GLJ2 98 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 NEMP1O14524 444 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 ZNF623O75123 536 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 FKBP9O95302 570 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 CNOT4O95628 575 aaKnown RBP5.6□□□□□ -1.51
USP40-209ENST00000452724 IL18BPO95998 194 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 CYP17A1P05093 508 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 WDR72Q3MJ13 1102 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 ZMAT1Q5H9K5 638 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 ZNF585AQ6P3V2 769 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 FKBP9P1Q75LS8 142 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 GPR155Q7Z3F1 870 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 C11orf74Q86VG3 221 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 GIMAP8Q8ND71 665 aaPredicted RBP5.6□□□□□ -1.51
USP40-209ENST00000452724 GBP4Q96PP9 640 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 TTC1Q99614 292 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 MEGF9Q9H1U4 602 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 IFT22Q9H7X7 185 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 CD248Q9HCU0 757 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 SPTLC3Q9NUV7 552 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 BTBD7Q9P203 1132 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 SRRDQ9UH36 339 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 FBXO10Q9UK96 956 aa5.6□□□□□ -1.51
USP40-209ENST00000452724 MUSKO15146 869 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 ZEB2O60315 1214 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 CPEP16870 476 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 POU3F3P20264 500 aaPredicted RBP5.59□□□□□ -1.51
USP40-209ENST00000452724 PTGS1P23219 599 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 PTX3P26022 381 aaPredicted RBP5.59□□□□□ -1.51
USP40-209ENST00000452724 MC4RP32245 332 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 FNTBP49356 437 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 CXXC5Q7LFL8 322 aaKnown RBP5.59□□□□□ -1.51
USP40-209ENST00000452724 PASD1Q8IV76 773 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 HIPK4Q8NE63 616 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 SCYL1Q96KG9 808 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 LRRC37BQ96QE4 947 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 PTPN18Q99952 460 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 FAM126AQ9BYI3 521 aaPredicted RBP5.59□□□□□ -1.51
USP40-209ENST00000452724 EMC7Q9NPA0 242 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 INCENPQ9NQS7 918 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 TOMM22Q9NS69 142 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 ASB1Q9Y576 335 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 COL4A3BPQ9Y5P4 624 aa5.59□□□□□ -1.51
USP40-209ENST00000452724 PRAMEF22A3QJZ6 481 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 TGM5O43548 720 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 BRINP1O60477 761 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 EYA4O95677 639 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 ID4P47928 161 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 RAC3P60763 192 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 ATP13A4Q4VNC1 1196 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 ESRP1Q6NXG1 681 aaKnown RBP5.58□□□□□ -1.52
USP40-209ENST00000452724 USP51Q70EK9 711 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 PALM2Q8IXS6 379 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 ZCRB1Q8TBF4 217 aaKnown RBP5.58□□□□□ -1.52
USP40-209ENST00000452724 ERCC4Q92889 916 aaPredicted RBP5.58□□□□□ -1.52
USP40-209ENST00000452724 UCKL1Q9NWZ5 548 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 MCM8Q9UJA3 840 aa5.58□□□□□ -1.52
USP40-209ENST00000452724 APOBEC2Q9Y235 224 aaKnown RBP5.58□□□□□ -1.52
USP40-209ENST00000452724 GOLGA6L22H0YM25 854 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 MPIG6BO95866 241 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 NCLP19338 710 aaKnown RBP5.57□□□□□ -1.52
USP40-209ENST00000452724 TACR2P21452 398 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 ETV4P43268 484 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 SMAD3P84022 425 aaKnown RBP5.57□□□□□ -1.52
USP40-209ENST00000452724 AMPD3Q01432 767 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 TOP3AQ13472 1001 aaPredicted RBP5.57□□□□□ -1.52
USP40-209ENST00000452724 STAT4Q14765 748 aa5.57□□□□□ -1.52
USP40-209ENST00000452724 EPHA7Q15375 998 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms