RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 SLFN12LQ6IEE8 588 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 USP17L1Q7RTZ2 530 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TMEM35BQ8NCS4 154 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 POLR3CQ9BUI4 534 aaPredicted RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KIFC3Q9BVG8 833 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 BRIP1Q9BX63 1249 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ZWILCHQ9H900 591 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 NGRNQ9NPE2 291 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ADD3Q9UEY8 706 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SLC12A6Q9UHW9 1150 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CPSF3Q9UKF6 684 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TRPC5Q9UL62 973 aaPredicted RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ASAP1Q9ULH1 1129 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 A0A1W2PQC6 194 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KPNA7A9QM74 516 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 NR3C1P04150 777 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TAC1P20366 129 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ARFIP2P53365 341 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SEMA3FQ13275 785 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 AP3B2Q13367 1082 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CTTNQ14247 550 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TEDDM1Q5T9Z0 273 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CNKSR1Q969H4 720 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 GRAMD1AQ96CP6 724 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 BTBD6Q96KE9 485 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CEP19Q96LK0 163 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ZMAT2Q96NC0 199 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 MTA3Q9BTC8 594 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 MRPL40Q9NQ50 206 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 HDAC6Q9UBN7 1215 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ZDHHC9Q9Y397 364 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 PLEKHG1Q9ULL1 1385 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 MBD5Q9P267 1494 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KDM5CP41229 1560 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 HECW2Q9P2P5 1572 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TYW5A2RUC4 315 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SPDYE2BA6NHP3 402 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 K7ERI5 159 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SPDYE6P0CI01 402 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 MCF2P10911 925 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ATP7BP35670 1465 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KCNJ6P48051 423 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CPSF1Q10570 1443 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KIF22Q14807 665 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 PFKFB3Q16875 520 aaPredicted RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ARHGAP31Q2M1Z3 1444 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TMEM259Q4ZIN3 620 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 GRAMD4Q6IC98 578 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ACAD11Q709F0 780 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TMC4Q7Z404 712 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SIX6OS1Q8N1H7 587 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ARHGAP18Q8N392 663 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KCNV2Q8TDN2 545 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 TGS1Q96RS0 853 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 FAM167BQ9BTA0 163 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 HEMGNQ9BXL5 484 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 MLXIPLQ9NP71 852 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 KLC4Q9NSK0 619 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 LCMT1Q9UIC8 334 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 LMTK3Q96Q04 1460 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 NCK2O43639 380 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 GDF11O95390 407 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 VSNL1P62760 191 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 AP2B1P63010 937 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 CAPRIN2Q6IMN6 1127 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 GADL1Q6ZQY3 521 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 ANO5Q75V66 913 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SRLQ86TD4 932 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 DHX40Q8IX18 779 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SPATA4Q8NEY3 305 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 HEXIM2Q96MH2 286 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 SMYD3Q9H7B4 428 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 WARS2Q9UGM6 360 aaKnown RBP8.32□□□□□ -1.08
NEDD9-204ENST00000448183 DCTN4Q9UJW0 460 aa8.32□□□□□ -1.08
NEDD9-204ENST00000448183 WDR17Q8IZU2 1322 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 PPP1R37O75864 691 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 LDHAP00338 332 aaKnown RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 EPHB1P54762 984 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 DRP2Q13474 957 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ARMCX2Q7L311 632 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 METTL23Q86XA0 190 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 SFR1Q86XK3 245 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 XXYLT1Q8NBI6 393 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 FLAD1Q8NFF5 587 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 RUBCNQ92622 972 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 WDR24Q96S15 920 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 MSTO1Q9BUK6 570 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 EDEM3Q9BZQ6 932 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 NDE1Q9NXR1 346 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 SLAIN2Q9P270 581 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 FAM8A1Q9UBU6 413 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ARHGAP10A1A4S6 786 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 MEFVO15553 781 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 ZBTB24O43167 697 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 PSAPP07602 524 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 XPAP23025 273 aaPredicted RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 CDK8P49336 464 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 PEX3P56589 373 aa8.31□□□□□ -1.08
NEDD9-204ENST00000448183 MKRN3Q13064 507 aaKnown RBP8.31□□□□□ -1.08
NEDD9-204ENST00000448183 SCARA5Q6ZMJ2 495 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms