RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RNF149Q8NC42 400 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 ACRBPQ8NEB7 543 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SCFD2Q8WU76 684 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 FAM149B1Q96BN6 582 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 OPTNQ96CV9 577 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SAAL1Q96ER3 474 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 PANX2Q96RD6 677 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 C7orf25Q9BPX7 421 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 GCOM2Q9BZD3 368 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 GLIS2Q9BZE0 524 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 KIAA1683Q9H0B3 1180 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 FEZ2Q9UHY8 353 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 ODF2LQ9ULJ1 636 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SLC26A4O43511 780 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 RPA1P27694 616 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 VAMP7P51809 220 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 GRIN1Q05586 938 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 CEP128Q6ZU80 1094 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 PLCD3Q8N3E9 789 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 RPGRIP1Q96KN7 1286 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 REEP2Q9BRK0 252 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 TIPINQ9BVW5 301 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 MOV10L1Q9BXT6 1211 aaKnown RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 PLEKHA4Q9H4M7 779 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SPTLC3Q9NUV7 552 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 DNAJC12Q9UKB3 198 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 MYMKA6NI61 221 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 KRIT1O00522 736 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 MFAP3LO75121 409 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 DPYDQ12882 1025 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 RASGRP2Q7LDG7 609 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 CCDC89Q8N998 374 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 NSMCE1Q8WV22 266 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 NUDT12Q9BQG2 462 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 PCDHAC2Q9Y5I4 1007 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SYNJ2BP-COX16A0A087WUM0 186 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 ARHGEF37A1IGU5 675 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 GOLGA8SH3BPF8 625 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 MSH4O15457 936 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 ZNF500O60304 480 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 C6orf222P0C671 652 aaPredicted RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 PKN1Q16512 942 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 KIAA1841Q6NSI8 718 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 TRIM50Q86XT4 487 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SLC35F6Q8N357 371 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SREK1Q8WXA9 508 aaKnown RBP8.02□□□□□ -1.13
SYNE1-213ENST00000448038 TMEM143Q96AN5 459 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 SELENOSQ9BQE4 189 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 COX16Q9P0S2 106 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 TTLL3Q9Y4R7 772 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 BCL9LQ86UU0 1499 aa8.02□□□□□ -1.13
SYNE1-213ENST00000448038 NDUFA10O95299 355 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PRKCEQ02156 737 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PPFIA1Q13136 1202 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 ANKRD40Q6AI12 368 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 DSTYKQ6XUX3 929 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PPP1R21Q6ZMI0 780 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 ADAT2Q7Z6V5 191 aaKnown RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 HEXIM2Q96MH2 286 aaKnown RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 GPRC5DQ9NZD1 345 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 SUCLA2Q9P2R7 463 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 IFNB1P01574 187 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 MAPK4P31152 587 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 KIF11P52732 1056 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 EFNA5P52803 228 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 CYP27A1Q02318 531 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PLA2G4FQ68DD2 849 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 DHX40Q8IX18 779 aaKnown RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 CCDC63Q8NA47 563 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 GPRASP2Q96D09 838 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 ADAMTS1Q9UHI8 967 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 KCNH4Q9UQ05 1017 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 SMIM22K7EJ46 135 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 GPC3P51654 580 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 UAP1Q16222 522 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 MAP3K20Q9NYL2 800 aaKnown RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 INPP5FQ9Y2H2 1132 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 NFIBO00712 420 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PDXKO00764 312 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 SREBF1P36956 1147 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PAK2Q13177 524 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PPP1R2P3Q6NXS1 205 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 OR6B3Q8NGW1 331 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 RSAD2Q8WXG1 361 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 ANKS1AQ92625 1134 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 CAMKK2Q96RR4 588 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 CEP72Q9P209 647 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 AGO2Q9UKV8 859 aaKnown RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 BAZ2BQ9UIF8 2168 aaKnown RBP8.01□□□□□ -1.13
SYNE1-213ENST00000448038 CACNA1FO60840 1977 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 ENC1O14682 589 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 RHOBTB3O94955 611 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 ARPP19P56211 112 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 PTPAQ15257 358 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 GPD1LQ8N335 351 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 MYRIPQ8NFW9 859 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 RAB17Q9H0T7 212 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 KCND2Q9NZV8 630 aa8.01□□□□□ -1.13
SYNE1-213ENST00000448038 GCLCP48506 637 aaPredicted RBP8□□□□□ -1.13
SYNE1-213ENST00000448038 ZNF394Q53GI3 561 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms