RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TGFB3P10600 412 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 HARSP12081 509 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 HOXD8P13378 290 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CD40P25942 277 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 KIF5BP33176 963 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 TNNT3P45378 269 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CCT2P78371 535 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ROR1Q01973 937 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 NEXNQ0ZGT2 675 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 MAPK7Q13164 816 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ARL13BQ3SXY8 428 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ZACNQ401N2 412 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ANKRD39Q53RE8 183 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC158Q5M9N0 1113 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 GPATCH4Q5T3I0 446 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 PRAMEF13Q5VWM6 474 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 SPOCD1Q6ZMY3 1216 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 MAEAQ7L5Y9 396 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 C2CD5Q86YS7 1000 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 KIAA0319LQ8IZA0 1049 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 GALNT15Q8N3T1 639 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 COA7Q96BR5 231 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 TMEM120AQ9BXJ8 343 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 MRPL9Q9BYD2 267 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 MAGEH1Q9H213 219 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 WASH6PQ9NQA3 447 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 DISC1Q9NRI5 854 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 GPR27Q9NS67 375 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 GPATCH2Q9NW75 528 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 STAP2Q9UGK3 403 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 MSRAQ9UJ68 235 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 STXBP5LQ9Y2K9 1186 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 PCDHA2Q9Y5H9 948 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CACNA1AO00555 2505 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 TTLL8A6PVC2 850 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 B4E171 279 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 AREL1O15033 823 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 FANCGO15287 622 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 TBCAO75347 108 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ECEL1O95672 775 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 BAG2O95816 211 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 RPLP2P05387 115 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 TPM2P07951 284 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 SELPP16109 830 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNA6P17658 529 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 EPHA1P21709 976 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ABCD1P33897 745 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 TSPAN7P41732 249 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 PAPOLAP51003 745 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CASP5P51878 434 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 SCARF1Q14162 830 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 DLGAP5Q15398 846 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ASIC2Q16515 512 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 DNAJC21Q5F1R6 531 aaKnown RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF697Q5TEC3 545 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 RSPO2Q6UXX9 243 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 VSIG1Q86XK7 387 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ZZZ3Q8IYH5 903 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHDC4Q8TBB5 520 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 RIN2Q8WYP3 895 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CENPIQ92674 756 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 YME1L1Q96TA2 773 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 NELL2Q99435 816 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 SEZ6LQ9BYH1 1024 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 DCP1AQ9NPI6 582 aaPredicted RBP2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 GFOD1Q9NXC2 390 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 CPA4Q9UI42 421 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 ODF2LQ9ULJ1 636 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 AP4E1Q9UPM8 1137 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 DYRK1BQ9Y463 629 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 SPO11Q9Y5K1 396 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 FHOD1Q9Y613 1164 aa2.65□□□□□ -1.99
CCDC88A-208ENST00000444458 H3BUI4 141 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TRIM38O00635 465 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNK3O14649 394 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 AHCYL1O43865 530 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 THBDP07204 575 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 GLULP15104 373 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC7A1P30825 629 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 TNNT2P45379 298 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 HSPA7P48741 367 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 C1QTNF8P60827 252 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 HMGN5P82970 282 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 MAP3K12Q12852 859 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNAB2Q13303 367 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 PFKFB4Q16877 469 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHDC7AQ5VTJ3 777 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 ZNF449Q6P9G9 518 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LMBR1LQ6UX01 489 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LBX2Q6XYB7 198 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 LRRTM4Q86VH4 590 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 MRPL41Q8IXM3 137 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CEP57L1Q8IYX8 460 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 CCDC191Q8NCU4 936 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 RRP36Q96EU6 259 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 YTHDC1Q96MU7 727 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 NUCKS1Q9H1E3 243 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 SEPSECSQ9HD40 501 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 OBP2BQ9NPH6 170 aa2.64□□□□□ -1.99
CCDC88A-208ENST00000444458 GPRC5CQ9NQ84 441 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms