RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 SPATA31C1P0DKV0 1188 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 ATP2A2P16615 1042 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 CD52P31358 61 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 CCT6AP40227 531 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 RABGGTBP53611 331 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 POLGP54098 1239 aaPredicted RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 NLRP11P59045 1033 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 WDR5P61964 334 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 SMAD3P84022 425 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 ATP2C1P98194 919 aaPredicted RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 DRP2Q13474 957 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 LINC01465Q8N7H1 131 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 OSMRQ99650 979 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 RAB34Q9BZG1 259 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 AGO3Q9H9G7 860 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 TUFT1Q9NNX1 390 aa20.85■□□□□ 0.93
SHH-204ENST00000441114 RANBP2P49792 3224 aaKnown RBP20.85■□□□□ 0.93
SHH-204ENST00000441114 PP2D1A8MPX8 630 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 PBX2P40425 430 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 PRPHP41219 470 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 DNM2P50570 870 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 DEFB103AP81534 67 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 PDIA5Q14554 519 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 SF3A1Q15459 793 aaKnown RBP20.84■□□□□ 0.93
SHH-204ENST00000441114 POTEGQ6S5H5 508 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.84■□□□□ 0.93
SHH-204ENST00000441114 TSHZ1Q6ZSZ6 1077 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 TMCO2Q7Z6W1 182 aaPredicted RBP20.84■□□□□ 0.93
SHH-204ENST00000441114 SCLT1Q96NL6 688 aa20.84■□□□□ 0.93
SHH-204ENST00000441114 POLR3CQ9BUI4 534 aaPredicted RBP20.84■□□□□ 0.93
SHH-204ENST00000441114 MYH15Q9Y2K3 1946 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 VWA3AA6NCI4 1184 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 LYPLA2O95372 231 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 CDC25AP30304 524 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 CEBPZQ03701 1054 aaKnown RBP20.83■□□□□ 0.93
SHH-204ENST00000441114 MKRN4PQ13434 485 aaPredicted RBP20.83■□□□□ 0.93
SHH-204ENST00000441114 HAUS3Q68CZ6 603 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 SNX29Q8TEQ0 813 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 SLC7A3Q8WY07 619 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 APBB2Q92870 758 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 SLC9A7Q96T83 725 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 JPH2Q9BR39 696 aaPredicted RBP20.83■□□□□ 0.93
SHH-204ENST00000441114 ANKEF1Q9NU02 776 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 SUCLA2Q9P2R7 463 aaPredicted RBP20.83■□□□□ 0.93
SHH-204ENST00000441114 CLIC4Q9Y696 253 aa20.83■□□□□ 0.93
SHH-204ENST00000441114 KDM3AQ9Y4C1 1321 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 IGKV6-21A0A0C4DH24 114 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 EFCAB14O75071 495 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 GPR32O75388 356 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 RPA1P27694 616 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 RFC5P40937 340 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 CRYBB1P53674 252 aaPredicted RBP20.82■□□□□ 0.92
SHH-204ENST00000441114 NFX1Q12986 1120 aaKnown RBP20.82■□□□□ 0.92
SHH-204ENST00000441114 PAK2Q13177 524 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 ZRSR1Q15695 479 aaKnown RBP20.82■□□□□ 0.92
SHH-204ENST00000441114 FAM117BQ6P1L5 589 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 RHPN2Q8IUC4 686 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 IGSF22Q8N9C0 903 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 TMEM40Q8WWA1 233 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 TMEM143Q96AN5 459 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 PBX4Q9BYU1 374 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 MSRAQ9UJ68 235 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 PADI3Q9ULW8 664 aa20.82■□□□□ 0.92
SHH-204ENST00000441114 NOC2LQ9Y3T9 749 aaKnown RBP20.82■□□□□ 0.92
SHH-204ENST00000441114 RPS6KA5O75582 802 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 AMHP03971 560 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 MYOGP15173 224 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 DNAJB2P25686 324 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 RARRES1P49788 294 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 GPC3P51654 580 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 EMC2Q15006 297 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 ECM1Q16610 540 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 KRT79Q5XKE5 535 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 Q7L0L9 218 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 KSR1Q8IVT5 923 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 EXOC8Q8IYI6 725 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 MYOCDQ8IZQ8 938 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 USP38Q8NB14 1042 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 NLRP7Q8WX94 980 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 FAM161BQ96MY7 647 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 NACC1Q96RE7 527 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 MTRQ99707 1265 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 ZBED2Q9BTP6 218 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 ADAMTS10Q9H324 1103 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 ZSCAN16Q9H4T2 348 aaPredicted RBP20.81■□□□□ 0.92
SHH-204ENST00000441114 DHX33Q9H6R0 707 aaKnown RBP20.81■□□□□ 0.92
SHH-204ENST00000441114 PPME1Q9Y570 386 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 SQORQ9Y6N5 450 aa20.81■□□□□ 0.92
SHH-204ENST00000441114 IBSPP21815 317 aaPredicted RBP20.8■□□□□ 0.92
SHH-204ENST00000441114 ARL6IP4Q66PJ3 421 aaKnown RBP20.8■□□□□ 0.92
SHH-204ENST00000441114 HERC6Q8IVU3 1022 aa20.8■□□□□ 0.92
SHH-204ENST00000441114 PHOSPHO2Q8TCD6 241 aa20.8■□□□□ 0.92
SHH-204ENST00000441114 NKX2-4Q9H2Z4 354 aa20.8■□□□□ 0.92
SHH-204ENST00000441114 DDX19AQ9NUU7 478 aaKnown RBP20.8■□□□□ 0.92
SHH-204ENST00000441114 KIAA1024Q9UPX6 916 aa20.8■□□□□ 0.92
SHH-204ENST00000441114 STK24Q9Y6E0 443 aa20.8■□□□□ 0.92
SHH-204ENST00000441114 A0A087WZ62 844 aa20.79■□□□□ 0.92
SHH-204ENST00000441114 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.79■□□□□ 0.92
SHH-204ENST00000441114 USO1O60763 962 aaKnown RBP20.79■□□□□ 0.92
SHH-204ENST00000441114 UPP2O95045 317 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms