RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MAFAQ8NHW3 353 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-201ENST00000437679 MTMR9Q96QG7 549 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 YME1L1Q96TA2 773 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 LXNQ9BS40 222 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 ZSWIM4Q9H7M6 989 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 CERS4Q9HA82 394 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 CDHR5Q9HBB8 845 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 SMC3Q9UQE7 1217 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.03■□□□□ 0.32
LIMS3-201ENST00000437679 CHD9Q3L8U1 2897 aa17.03■□□□□ 0.32
LIMS3-201ENST00000437679 GPR182O15218 404 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 GPR32O75388 356 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 GJB2P29033 226 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 NLRP11P59045 1033 aaKnown RBP17.02■□□□□ 0.32
LIMS3-201ENST00000437679 HTRA4P83105 476 aaPredicted RBP17.02■□□□□ 0.32
LIMS3-201ENST00000437679 CYP4A11Q02928 519 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 ZNF174Q15697 407 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 TMEM266Q2M3C6 531 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 TTC38Q5R3I4 469 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 ANO5Q75V66 913 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 OTUD6AQ7L8S5 288 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 C4orf19Q8IY42 314 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 NEK9Q8TD19 979 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 ARNTL2Q8WYA1 636 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 DYDC2Q96IM9 177 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 SCLT1Q96NL6 688 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 OSMRQ99650 979 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 JPH2Q9BR39 696 aaPredicted RBP17.02■□□□□ 0.32
LIMS3-201ENST00000437679 SH2D3AQ9BRG2 576 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 TMEM60Q9H2L4 133 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 CYP26B1Q9NR63 512 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 RGL1Q9NZL6 768 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 NOC2LQ9Y3T9 749 aaKnown RBP17.02■□□□□ 0.32
LIMS3-201ENST00000437679 TTC3P53804 2025 aa17.02■□□□□ 0.32
LIMS3-201ENST00000437679 H3BQV1 296 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 ARHGEF15O94989 841 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 IGFBP4P22692 258 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 U2AF2P26368 475 aaKnown RBP eCLIP17.01■□□□□ 0.31
LIMS3-201ENST00000437679 YWHABP31946 246 aaKnown RBP17.01■□□□□ 0.31
LIMS3-201ENST00000437679 CDC42EP1Q00587 391 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 CTTNQ14247 550 aaKnown RBP17.01■□□□□ 0.31
LIMS3-201ENST00000437679 PLA2G4FQ68DD2 849 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 TPH2Q8IWU9 490 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 EXOC8Q8IYI6 725 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 TMEM40Q8WWA1 233 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 CEP170P1Q96L14 293 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 CEP89Q96ST8 783 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 EIF2AK1Q9BQI3 630 aaKnown RBP17.01■□□□□ 0.31
LIMS3-201ENST00000437679 ERVK-5Q9HDB9 667 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 ST3GAL5Q9UNP4 418 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 PPME1Q9Y570 386 aa17.01■□□□□ 0.31
LIMS3-201ENST00000437679 IGKV6-21A0A0C4DH24 114 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 LINC01553A4QN01 128 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 MAFO75444 373 aaPredicted RBP17■□□□□ 0.31
LIMS3-201ENST00000437679 SLITRK3O94933 977 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 OR52Z1P0C646 297 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 GPC3P51654 580 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 NPEPPSP55786 919 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 MCTP1Q6DN14 999 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 NLRP7Q8WX94 980 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 SLC7A3Q8WY07 619 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 TGS1Q96RS0 853 aaKnown RBP17■□□□□ 0.31
LIMS3-201ENST00000437679 TSPYL2Q9H2G4 693 aaPredicted RBP17■□□□□ 0.31
LIMS3-201ENST00000437679 ADAMTS10Q9H324 1103 aa17■□□□□ 0.31
LIMS3-201ENST00000437679 WRAP73Q9P2S5 460 aaPredicted RBP17■□□□□ 0.31
LIMS3-201ENST00000437679 EIF4BP23588 611 aaKnown RBP16.99■□□□□ 0.31
LIMS3-201ENST00000437679 RFC5P40937 340 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 POLGP54098 1239 aaPredicted RBP16.99■□□□□ 0.31
LIMS3-201ENST00000437679 ERVK-21P61565 698 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 ADGRE1Q14246 886 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 XKR9Q5GH70 373 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 RTN4RL1Q86UN2 441 aaPredicted RBP16.99■□□□□ 0.31
LIMS3-201ENST00000437679 FAM228AQ86W67 206 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 SP7Q8TDD2 431 aaPredicted RBP16.99■□□□□ 0.31
LIMS3-201ENST00000437679 LINC01599Q8WXQ3 324 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 HSD17B14Q9BPX1 270 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 TMX1Q9H3N1 280 aa16.99■□□□□ 0.31
LIMS3-201ENST00000437679 RNF216Q9NWF9 866 aaPredicted RBP16.99■□□□□ 0.31
LIMS3-201ENST00000437679 SUCLA2Q9P2R7 463 aaPredicted RBP16.99■□□□□ 0.31
LIMS3-201ENST00000437679 CHD7Q9P2D1 2997 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 DENND3A2RUS2 1198 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 POTEMA6NI47 508 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 RFXAPO00287 272 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 GTPBP6O43824 516 aaPredicted RBP16.98■□□□□ 0.31
LIMS3-201ENST00000437679 STAG3L1P0CL83 205 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 TECP42680 631 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 DRP2Q13474 957 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 NPAS4Q8IUM7 802 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 SLC17A8Q8NDX2 589 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 ZNF668Q96K58 619 aaPredicted RBP16.98■□□□□ 0.31
LIMS3-201ENST00000437679 CCDC43Q96MW1 224 aaKnown RBP16.98■□□□□ 0.31
LIMS3-201ENST00000437679 GCOM2Q9BZD3 368 aaPredicted RBP16.98■□□□□ 0.31
LIMS3-201ENST00000437679 C1orf112Q9NSG2 853 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 MTUS1Q9ULD2 1270 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 LRFN2Q9ULH4 789 aa16.98■□□□□ 0.31
LIMS3-201ENST00000437679 EPOPA6NHQ4 379 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 LYPLA2O95372 231 aa16.97■□□□□ 0.31
LIMS3-201ENST00000437679 DARSP14868 501 aaKnown RBP16.97■□□□□ 0.31
LIMS3-201ENST00000437679 SARSP49591 514 aaKnown RBP16.97■□□□□ 0.31
LIMS3-201ENST00000437679 NBR1Q14596 966 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms