RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 TTC19Q6DKK2 380 aaPredicted RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 TYW1BQ6NUM6 668 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 CC2D1AQ6P1N0 951 aaPredicted RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 SHCBP1Q8NEM2 672 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 BCAS4Q8TDM0 211 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 IL17RAQ96F46 866 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 BARHL2Q9NY43 387 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 EIF3CLB5ME19 914 aaKnown RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 ATP8B1O43520 1251 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 DSG3P32926 999 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 BFSP2Q13515 415 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 PAN2Q504Q3 1202 aaKnown RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 USP49Q70CQ1 688 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 AFG1LQ8WV93 481 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 SECISBP2LQ93073 1101 aaKnown RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 EIF3CQ99613 913 aaKnown RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 MTRQ99707 1265 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 PLVAPQ9BX97 442 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 SSX2IPQ9Y2D8 614 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 KNDC1Q76NI1 1749 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 MRPS9P82933 396 aaKnown RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 WHAMMP3Q1A5X7 153 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 KLRG1Q96E93 195 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 FAM20AQ96MK3 541 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 ACCSQ96QU6 501 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 JMJD4Q9H9V9 463 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 ERAP1Q9NZ08 941 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 OPA1O60313 960 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 ICAM1P05362 532 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 SPRYD7Q5W111 196 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 LXNQ9BS40 222 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 LAD1O00515 517 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 MAGEA1P43355 309 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 CCDC121Q6ZUS5 278 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 SND1Q7KZF4 910 aaKnown RBP eCLIP11.54□□□□□ -0.56
TCOF1-204ENST00000427724 RRAGAQ7L523 313 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 LRRC71Q8N4P6 559 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 MOV10L1Q9BXT6 1211 aaKnown RBP11.54□□□□□ -0.56
TCOF1-204ENST00000427724 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-204ENST00000427724 RGL1Q9NZL6 768 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 USTQ9Y2C2 406 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 CCDC151A5D8V7 595 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 FAM205CA6NFA0 338 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 NFIBO00712 420 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 CPB1P15086 417 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 PIK3CAP42336 1068 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 MAGEA9P43362 315 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 VAV2P52735 878 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 ABHD16BQ9H3Z7 469 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 SUCLA2Q9P2R7 463 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-204ENST00000427724 PRG3Q9Y2Y8 225 aaPredicted RBP11.54□□□□□ -0.56
TCOF1-204ENST00000427724 LRP6O75581 1613 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 GOLGA6BA6NDN3 693 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 BNIP3LO60238 219 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 SHMT1P34896 483 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 CNTN2Q02246 1040 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 GRIN1Q05586 938 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 MYO1EQ12965 1108 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 GLB1LQ6UWU2 654 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 SRLQ86TD4 932 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 POTEDQ86YR6 584 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 ELMOD1Q8N336 334 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 OR6B3Q8NGW1 331 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 TMEM143Q96AN5 459 aa11.54□□□□□ -0.56
TCOF1-204ENST00000427724 MAK16Q9BXY0 300 aaKnown RBP11.54□□□□□ -0.56
TCOF1-204ENST00000427724 BTBD19C9JJ37 291 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 SLC16A4O15374 487 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 CA12O43570 354 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 BCRP11274 1271 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 BEX3Q00994 111 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 SCYL2Q6P3W7 929 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 EHD4Q9H223 541 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 TAL1P17542 331 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-204ENST00000427724 CLNS1AP54105 237 aaKnown RBP11.53□□□□□ -0.56
TCOF1-204ENST00000427724 FKBP1AP62942 108 aaKnown RBP11.53□□□□□ -0.56
TCOF1-204ENST00000427724 BFSP1Q12934 665 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 KRT31Q15323 416 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 SCARA5Q6ZMJ2 495 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 SPZ1Q9BXG8 430 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 HAUS4Q9H6D7 363 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 C17orf102A2RUQ5 167 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 POTECB2RU33 542 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 C2CD2LO14523 706 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 ANXA13P27216 316 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 SF3A3Q12874 501 aaKnown RBP eCLIP11.53□□□□□ -0.56
TCOF1-204ENST00000427724 CXCL17Q6UXB2 119 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 ZNF784Q8NCA9 323 aaPredicted RBP11.53□□□□□ -0.56
TCOF1-204ENST00000427724 IGDCC4Q8TDY8 1250 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 GANCQ8TET4 914 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 IFIH1Q9BYX4 1025 aaKnown RBP11.53□□□□□ -0.56
TCOF1-204ENST00000427724 TUBE1Q9UJT0 475 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 WDR19Q8NEZ3 1342 aa11.53□□□□□ -0.56
TCOF1-204ENST00000427724 E9PMD0 336 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 MFAP3LO75121 409 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 TADA2AO75478 443 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 CD58P19256 250 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 NLRP11P59045 1033 aaKnown RBP11.52□□□□□ -0.56
TCOF1-204ENST00000427724 C8orf74Q6P047 294 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 SGMS1Q86VZ5 419 aa11.52□□□□□ -0.56
TCOF1-204ENST00000427724 TMEM169Q96HH4 297 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms