RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PSMC6P62333 389 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 PTPN11Q06124 597 aaPredicted RBP11.21□□□□□ -0.62
CD44-207ENST00000425428 GRIK4Q16099 956 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 CAMK4Q16566 473 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 ECM1Q16610 540 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 FAM102BQ5T8I3 360 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 PLA2G4FQ68DD2 849 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 NFRKBQ6P4R8 1299 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 ZNF710Q8N1W2 664 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 PCYT2Q99447 389 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 LARSQ9P2J5 1176 aaKnown RBP11.21□□□□□ -0.62
CD44-207ENST00000425428 ODF2LQ9ULJ1 636 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 A0A087X0B3 334 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 H0YCG3 227 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 TLR3O15455 904 aaKnown RBP11.2□□□□□ -0.62
CD44-207ENST00000425428 GAP43P17677 238 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 CYP11B2P19099 503 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 PTGS1P23219 599 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 GJA8P48165 433 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 STIM1Q13586 685 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 ITGA7Q13683 1181 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 TFDP1Q14186 410 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 RINT1Q6NUQ1 792 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 CNNM4Q6P4Q7 775 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 DYMQ7RTS9 669 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 DDX12PQ92771 950 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 SCLT1Q96NL6 688 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 GSDMAQ96QA5 445 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 C7orf25Q9BPX7 421 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 RNPEPQ9H4A4 650 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 SUGCTQ9HAC7 445 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 C17orf75Q9HAS0 396 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 BLOC1S4Q9NUP1 217 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 TUBE1Q9UJT0 475 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 PHF24Q9UPV7 400 aa11.2□□□□□ -0.62
CD44-207ENST00000425428 PVALEFA0A1B0GWK0 134 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 MYADML2A6NDP7 307 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 ASAP2O43150 1006 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 SCP2P22307 547 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 GUCY2CP25092 1073 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 KLRC1P26715 233 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 NPEPPSP55786 919 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 PSMD2Q13200 908 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 DMP1Q13316 513 aaPredicted RBP11.19□□□□□ -0.62
CD44-207ENST00000425428 MXD4Q14582 209 aaPredicted RBP11.19□□□□□ -0.62
CD44-207ENST00000425428 EMC2Q15006 297 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 NBPF20Q3BBV1 942 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 NAALADL2Q58DX5 795 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 IER5Q5VY09 327 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 MYCT1Q8N699 235 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 CCDC155Q8N6L0 562 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 PSPC1Q8WXF1 523 aaKnown RBP11.19□□□□□ -0.62
CD44-207ENST00000425428 STAMQ92783 540 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 PARVGQ9HBI0 331 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 PANK4Q9NVE7 773 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 WRAP73Q9P2S5 460 aaPredicted RBP11.19□□□□□ -0.62
CD44-207ENST00000425428 SEL1LQ9UBV2 794 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 DACH1Q9UI36 760 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 PHLPP2Q6ZVD8 1323 aa11.19□□□□□ -0.62
CD44-207ENST00000425428 SCN10AQ9Y5Y9 1956 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 A0A087WWV3 80 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 A0A1W2PQ45 241 aaPredicted RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 A0A1W2PQY0 241 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 HAS3O00219 553 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 MAFO75444 373 aaPredicted RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 ATP4AP20648 1035 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 PPP1R2P41236 205 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 HERC4Q5GLZ8 1057 aaPredicted RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 EFCAB12Q6NXP0 572 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 TAF2Q6P1X5 1199 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 UNC13DQ70J99 1090 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 MAEAQ7L5Y9 396 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 KCNK18Q7Z418 384 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 TRIM9Q9C026 710 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 SENP6Q9GZR1 1112 aaPredicted RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 SETD4Q9NVD3 440 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 KIAA1468Q9P260 1216 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 HDAC6Q9UBN7 1215 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 AKT3Q9Y243 479 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 TELO2Q9Y4R8 837 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 ZBTB39O15060 712 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 RPN1P04843 607 aaKnown RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 CYP2C9P11712 490 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 RAD51AP2Q09MP3 1159 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 PNOCQ13519 176 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 CCSAPQ6IQ19 270 aaPredicted RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 MTHFD1LQ6UB35 978 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 C1orf186Q6ZWK4 172 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 NECAB2Q7Z6G3 386 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 NME8Q8N427 588 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 TRIML1Q8N9V2 468 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 KAT2BQ92831 832 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 CRISPLD2Q9H0B8 497 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 BLZF1Q9H2G9 400 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 DHX33Q9H6R0 707 aaKnown RBP11.18□□□□□ -0.62
CD44-207ENST00000425428 GTF2IRD1Q9UHL9 959 aa11.18□□□□□ -0.62
CD44-207ENST00000425428 KIAA0100Q14667 2235 aaKnown RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 TRIP12Q14669 1992 aaPredicted RBP11.17□□□□□ -0.62
CD44-207ENST00000425428 MYMKA6NI61 221 aa11.17□□□□□ -0.62
CD44-207ENST00000425428 CCDC169A6NNP5 214 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms