RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NAA35Q5VZE5 725 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 C11orf57Q6ZUT1 292 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 GIMAP8Q8ND71 665 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 RIN2Q8WYP3 895 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 PNKPQ96T60 521 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 TEKT3Q9BXF9 490 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 KIAA1683Q9H0B3 1180 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 GBA2Q9HCG7 927 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 HOMER2Q9NSB8 354 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 CHMP2BQ9UQN3 213 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 PRELID1Q9Y255 219 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 R3HDM2Q9Y2K5 976 aaKnown RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 VWA3AA6NCI4 1184 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 PLEKHA8P1O95397 391 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 CCT6AP40227 531 aaKnown RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 UBE2Q1Q7Z7E8 422 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 PAF1Q8N7H5 531 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 OTUD5Q96G74 571 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 AZI2Q9H6S1 392 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 RPAP3Q9H6T3 665 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 DDX25Q9UHL0 483 aaKnown RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 FAM196BA6NMK8 535 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 YDJCA8MPS7 323 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 BTBD18B2RXH4 712 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 SLC26A4O43511 780 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 GAS7O60861 476 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 SPAG1Q07617 926 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 KLC1Q07866 573 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 TLDC1Q6P9B6 456 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 SNRNP27Q8WVK2 155 aaKnown RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 P3H4Q92791 437 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 ACAD9Q9H845 621 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 NOP56O00567 594 aaKnown RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 HPDP32754 393 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 SHMT1P34896 483 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 CLCN2P51788 898 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 CCDC6Q16204 474 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 IFI16Q16666 785 aaKnown RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 CFAP58Q5T655 872 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 PEX5LQ8IYB4 626 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 ZBTB8BQ8NAP8 495 aaPredicted RBP10.61□□□□□ -0.71
USP54-205ENST00000424265 MSANTD4Q8NCY6 345 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 CLMNQ96JQ2 1002 aa10.61□□□□□ -0.71
USP54-205ENST00000424265 DDTLA6NHG4 134 aaPredicted RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 SLC16A2P36021 539 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 XRRA1Q6P2D8 792 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 ADGRF4Q8IZF3 695 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 OSBPL10Q9BXB5 764 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 FTOQ9C0B1 505 aaKnown RBP eCLIP10.6□□□□□ -0.71
USP54-205ENST00000424265 IL25Q9H293 177 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 RIC8AQ9NPQ8 531 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 FAM198AQ9UFP1 575 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 BRWD3Q6RI45 1802 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 RGPD3A6NKT7 1758 aaPredicted RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 RGPD4Q7Z3J3 1758 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 BACH1O14867 736 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 MTMR2Q13614 643 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 SLC39A14Q15043 492 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 ARMCX5Q6P1M9 558 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 OTUD6AQ7L8S5 288 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 TBC1D1Q86TI0 1168 aaPredicted RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 COG1Q8WTW3 980 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 SPATA17Q96L03 361 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 TEX13BQ9BXU2 312 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 ELP3Q9H9T3 547 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 TBC1D7Q9P0N9 293 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 KCNH3Q9ULD8 1083 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 TMCO1Q9UM00 188 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 SATB2Q9UPW6 733 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 STK38LQ9Y2H1 464 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 NMT2O60551 498 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 STK10O94804 968 aaKnown RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 HOXD10P28358 340 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 BLMHQ13867 455 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 SEC23AQ15436 765 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 CMTR1Q8N1G2 835 aaKnown RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 CHST13Q8NET6 341 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 SHOX2O60902 331 aaPredicted RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 VIMP08670 466 aaKnown RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 IDEP14735 1019 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 ATP2A2P16615 1042 aaKnown RBP10.6□□□□□ -0.71
USP54-205ENST00000424265 CMA1P23946 247 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 CCND1P24385 295 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 PPATQ06203 517 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 MYBPC3Q14896 1274 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 QRICH1Q2TAL8 776 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 RNF207Q6ZRF8 634 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 TRIM50Q86XT4 487 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 WDR24Q96S15 920 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 DKK3Q9UBP4 350 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 DNM3Q9UQ16 869 aa10.6□□□□□ -0.71
USP54-205ENST00000424265 COL1A1P02452 1464 aaPredicted RBP10.59□□□□□ -0.71
USP54-205ENST00000424265 BICDL2A1A5D9 508 aa10.59□□□□□ -0.71
USP54-205ENST00000424265 CELF2O95319 508 aaKnown RBP10.59□□□□□ -0.71
USP54-205ENST00000424265 LARGE1O95461 756 aa10.59□□□□□ -0.71
USP54-205ENST00000424265 BACE1P56817 501 aa10.59□□□□□ -0.71
USP54-205ENST00000424265 DPP9Q86TI2 863 aa10.59□□□□□ -0.71
USP54-205ENST00000424265 TAF4BQ92750 862 aa10.59□□□□□ -0.71
USP54-205ENST00000424265 PPP1R14BQ96C90 147 aa10.59□□□□□ -0.71
USP54-205ENST00000424265 EIF2AQ9BY44 585 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms