RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 FAM26DQ5JW98 314 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 TMEM240Q5SV17 173 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 EFCAB12Q6NXP0 572 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 ZNF365Q70YC5 407 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 KIAA0319LQ8IZA0 1049 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 PIGOQ8TEQ8 1089 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 RNPC3Q96LT9 517 aaKnown RBP13.94□□□□□ -0.18
SKA1-203ENST00000417656 CCDC43Q96MW1 224 aaKnown RBP13.94□□□□□ -0.18
SKA1-203ENST00000417656 MAP7D2Q96T17 732 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 MMTAG2Q9BU76 263 aaKnown RBP13.94□□□□□ -0.18
SKA1-203ENST00000417656 SUGCTQ9HAC7 445 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 ZDHHC9Q9Y397 364 aa13.94□□□□□ -0.18
SKA1-203ENST00000417656 M0QZ92 97 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 MAFO75444 373 aaPredicted RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 PARNO95453 639 aaKnown RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 CXCL10P02778 98 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 GHRP10912 638 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 NASPP49321 788 aaPredicted RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 RARRES1P49788 294 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 POLGP54098 1239 aaPredicted RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 EMC2Q15006 297 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 ECM1Q16610 540 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 TCTN1Q2MV58 587 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 KRT79Q5XKE5 535 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 OTUD6AQ7L8S5 288 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 OTOP2Q7RTS6 562 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 RPUSD2Q8IZ73 545 aaKnown RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 ZNF396Q96N95 335 aaPredicted RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 ANKEF1Q9NU02 776 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 DAXXQ9UER7 740 aaPredicted RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 FBXO2Q9UK22 296 aaPredicted RBP13.93□□□□□ -0.18
SKA1-203ENST00000417656 AKT3Q9Y243 479 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 PPME1Q9Y570 386 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 PTPRSQ13332 1948 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 MICAL3Q7RTP6 2002 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 TRIOBPQ9H2D6 2365 aa13.93□□□□□ -0.18
SKA1-203ENST00000417656 RANBP2P49792 3224 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 IGKV6-21A0A0C4DH24 114 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 A0A1W2PPC1 479 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 USO1O60763 962 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 FGBP02675 491 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 TMOD1P28289 359 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 ANP32AP39687 249 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 RFC5P40937 340 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 LPIN1Q14693 890 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 STK38Q15208 465 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 ZRSR1Q15695 479 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 IER5Q5VY09 327 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 SLC7A3Q8WY07 619 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 ZNF668Q96K58 619 aaPredicted RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 CELF4Q9BZC1 486 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 DHX33Q9H6R0 707 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 XPNPEP1Q9NQW7 623 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 DDX19AQ9NUU7 478 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 CXXC1Q9P0U4 656 aaPredicted RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 TFIP11Q9UBB9 837 aaKnown RBP13.92□□□□□ -0.18
SKA1-203ENST00000417656 GINS2Q9Y248 185 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 STK24Q9Y6E0 443 aa13.92□□□□□ -0.18
SKA1-203ENST00000417656 KDM3AQ9Y4C1 1321 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 ZBBXA8MT70 800 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 MUTP22033 750 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 LONP1P36776 959 aaKnown RBP13.91□□□□□ -0.18
SKA1-203ENST00000417656 DNM1Q05193 864 aaKnown RBP13.91□□□□□ -0.18
SKA1-203ENST00000417656 SLC39A14Q15043 492 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 KIZQ2M2Z5 673 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 PLEKHG4Q58EX7 1191 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 FBXO47Q5MNV8 452 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 CNKSR3Q6P9H4 555 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 CABP7Q86V35 215 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 NME8Q8N427 588 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 HERVK_113Q902F9 699 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 TMEM143Q96AN5 459 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 CHAMP1Q96JM3 812 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 AK8Q96MA6 479 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 PNMA5Q96PV4 448 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 NACC1Q96RE7 527 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 OSMRQ99650 979 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 MTRQ99707 1265 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 JPH2Q9BR39 696 aaPredicted RBP13.91□□□□□ -0.18
SKA1-203ENST00000417656 CSRNP2Q9H175 543 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 ATP6V0A4Q9HBG4 840 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 DBR1Q9UK59 544 aaKnown RBP13.91□□□□□ -0.18
SKA1-203ENST00000417656 KIAA1024Q9UPX6 916 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 GBF1Q92538 1859 aa13.91□□□□□ -0.18
SKA1-203ENST00000417656 ARHGEF35A5YM69 484 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 GPR32O75388 356 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 YEATS4O95619 227 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 ACTN1P12814 892 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 DDIT3P35638 169 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 GPC3P51654 580 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 NLRP11P59045 1033 aaKnown RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 GRB10Q13322 594 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 TMEM119Q4V9L6 283 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 HABP4Q5JVS0 413 aaKnown RBP13.9□□□□□ -0.18
SKA1-203ENST00000417656 SPECC1Q5M775 1068 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 RASIP1Q5U651 963 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 TSHZ1Q6ZSZ6 1077 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 KCNK18Q7Z418 384 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 LINC00301Q8NCQ3 95 aa13.9□□□□□ -0.18
SKA1-203ENST00000417656 DBF4BQ8NFT6 615 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms