RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZNF214Q9UL59 606 aaPredicted RBP16.33■□□□□ 0.2
USP4-203ENST00000415188 KRT86O43790 486 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 SLC25A27O95847 323 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 SYN1P17600 705 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 STAT3P40763 770 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 ZCWPW2Q504Y3 356 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 PRAMEF19Q5SWL8 479 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 PPP4R3CPQ6ZMV5 832 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 KCNK18Q7Z418 384 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 RIOX2Q8IUF8 465 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 ABRAQ8N0Z2 381 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 TXLNBQ8N3L3 684 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 FAM20AQ96MK3 541 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 PANK4Q9NVE7 773 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 SIK3Q9Y2K2 1263 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 FRMPD3Q5JV73 1810 aa16.32■□□□□ 0.2
USP4-203ENST00000415188 CCDC151A5D8V7 595 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 PGK2P07205 417 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 PLA2G4BP0C869 781 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 PNMA6AP0CW24 399 aaPredicted RBP16.31■□□□□ 0.2
USP4-203ENST00000415188 ZSCAN20P17040 1043 aaPredicted RBP16.31■□□□□ 0.2
USP4-203ENST00000415188 CIITAP33076 1130 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 SREBF1P36956 1147 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 FKBP3Q00688 224 aaKnown RBP16.31■□□□□ 0.2
USP4-203ENST00000415188 AMPD2Q01433 879 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 DMTNQ08495 405 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 LRRC26Q2I0M4 334 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 KIAA1328Q86T90 577 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 MAML3Q96JK9 1138 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 MMP19Q99542 508 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 NUCKS1Q9H1E3 243 aaKnown RBP16.31■□□□□ 0.2
USP4-203ENST00000415188 FHOD1Q9Y613 1164 aa16.31■□□□□ 0.2
USP4-203ENST00000415188 A0A0U1RQJ8 604 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 FRMD3A2A2Y4 597 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 MEIS2O14770 477 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 BMP3P12645 472 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 MARSP56192 900 aaKnown RBP16.3■□□□□ 0.2
USP4-203ENST00000415188 ARHGAP4P98171 946 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 ECM1Q16610 540 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 USP17L6PQ6QN14 398 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 ZC3H3Q8IXZ2 948 aaKnown RBP16.3■□□□□ 0.2
USP4-203ENST00000415188 MSANTD4Q8NCY6 345 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 ETNPPLQ8TBG4 499 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 ATRIPQ8WXE1 791 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 HPS3Q969F9 1004 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 JAKMIP2Q96AA8 810 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 NHEJ1Q9H9Q4 299 aaPredicted RBP16.3■□□□□ 0.2
USP4-203ENST00000415188 AGPAT5Q9NUQ2 364 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 SLC5A4Q9NY91 659 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 MYO6Q9UM54 1294 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 PLAGL2Q9UPG8 496 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 SZT2Q5T011 3432 aa16.3■□□□□ 0.2
USP4-203ENST00000415188 ANO9A1A5B4 782 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CTAGE15A4D2H0 777 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 SPDYE3A6NKU9 549 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 PIK3CDO00329 1044 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 MSCO60682 206 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CYP3A4P08684 503 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CTAGE8P0CG41 777 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 VAV2P52735 878 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CCDC122Q5T0U0 273 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CC2D1AQ6P1N0 951 aaPredicted RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 CTAGE6Q86UF2 777 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CTAGE4Q8IX94 777 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 HNRNPLLQ8WVV9 542 aaKnown RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 RPGRIP1Q96KN7 1286 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 PURBQ96QR8 312 aaKnown RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 PARD6BQ9BYG5 372 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 SENP6Q9GZR1 1112 aaPredicted RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 GBP3Q9H0R5 595 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 ARFGAP3Q9NP61 516 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 RAB21Q9UL25 225 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 COL4A3BPQ9Y5P4 624 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 USO1O60763 962 aaKnown RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 ERLIN1O75477 346 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 LCA5LO95447 670 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 CKAP4Q07065 602 aaKnown RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 KCTD2Q14681 263 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 SPA17Q15506 151 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 EDRF1Q3B7T1 1238 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 GJC2Q5T442 439 aaPredicted RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 PAPD7Q5XG87 772 aaKnown RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 SNRNP48Q6IEG0 339 aaKnown RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 TRAPPC11Q7Z392 1133 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 GPBP1Q86WP2 473 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 SYN2Q92777 582 aaPredicted RBP16.29■□□□□ 0.2
USP4-203ENST00000415188 GDF15Q99988 308 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 FAM184BQ9ULE4 1060 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 GUCA1BQ9UMX6 200 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 KIAA1024Q9UPX6 916 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 RIPK3Q9Y572 518 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 PCDHA2Q9Y5H9 948 aa16.29■□□□□ 0.2
USP4-203ENST00000415188 SEPT4O43236 478 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 CYP11B2P19099 503 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 RPA1P27694 616 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 ATN1P54259 1190 aaPredicted RBP16.28■□□□□ 0.2
USP4-203ENST00000415188 ZNF792Q3KQV3 632 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 CPXCR1Q8N123 301 aa16.28■□□□□ 0.2
USP4-203ENST00000415188 MSL3Q8N5Y2 521 aaKnown RBP16.28■□□□□ 0.2
USP4-203ENST00000415188 PRPF38AQ8NAV1 312 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms