RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 EDRF1Q3B7T1 1238 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 GLE1Q53GS7 698 aaKnown RBP12.91□□□□□ -0.34
PTPRF-205ENST00000414879 SHC4Q6S5L8 630 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 GSDMBQ8TAX9 411 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 PIGOQ8TEQ8 1089 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 SEPT1Q8WYJ6 367 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 SPATA33Q96N06 139 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 DEFB129Q9H1M3 183 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 PCDHA13Q9Y5I0 950 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 DENND3A2RUS2 1198 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 TDP2O95551 362 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 TBC1D8O95759 1140 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 GARSP41250 739 aaKnown RBP12.91□□□□□ -0.34
PTPRF-205ENST00000414879 PRCPP42785 496 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 EHHADHQ08426 723 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 TROAPQ12815 778 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 MESDQ14696 234 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 ANGEL2Q5VTE6 544 aaKnown RBP12.91□□□□□ -0.34
PTPRF-205ENST00000414879 SWSAP1Q6NVH7 229 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 SIX6OS1Q8N1H7 587 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 FAM133AQ8N9E0 248 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 TTC16Q8NEE8 873 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 ADARB2Q9NS39 739 aaKnown RBP12.91□□□□□ -0.34
PTPRF-205ENST00000414879 GDAQ9Y2T3 454 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 PEAK1Q9H792 1746 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 CASC4Q6P4E1 433 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 RSRC2Q7L4I2 434 aaKnown RBP12.91□□□□□ -0.34
PTPRF-205ENST00000414879 SPATS2Q86XZ4 545 aaKnown RBP12.91□□□□□ -0.34
PTPRF-205ENST00000414879 ARHGAP24Q8N264 748 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 C7orf31Q8N865 590 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 VPS37BQ9H9H4 285 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 GGA3Q9NZ52 723 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 KCNH4Q9UQ05 1017 aa12.91□□□□□ -0.34
PTPRF-205ENST00000414879 GPC3P51654 580 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 STAT5BP51692 787 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 SNAP25P60880 206 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 MAP7Q14244 749 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 TTC13Q8NBP0 860 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 BANK1Q8NDB2 785 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 APOL6Q9BWW8 343 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 ZFYVE28Q9HCC9 887 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 PFDN4Q9NQP4 134 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.9□□□□□ -0.341e-6■■■■□ 20.2
PTPRF-205ENST00000414879 GMNNO75496 209 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 RHOBTB3O94955 611 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 IFNB1P01574 187 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 NFKBIAP25963 317 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 CTNNA1P35221 906 aaKnown RBP12.9□□□□□ -0.34
PTPRF-205ENST00000414879 VAMP7P51809 220 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 TAP1Q03518 808 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 SREBF2Q12772 1141 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 STILQ15468 1287 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 KIAA1841Q6NSI8 718 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 GPD1LQ8N335 351 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 POLR3CQ9BUI4 534 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-205ENST00000414879 TRIM9Q9C026 710 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 JMJD4Q9H9V9 463 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 MCF2LO15068 1137 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 EIF3DO15371 548 aaKnown RBP eCLIP12.9□□□□□ -0.34
PTPRF-205ENST00000414879 CRCPO75575 148 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 NR3C2P08235 984 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 CAP2P40123 477 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 KCNJ6P48051 423 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 ZNF568Q3ZCX4 644 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 SLC35F6Q8N357 371 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 ZNF560Q96MR9 790 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 MKRN1Q9UHC7 482 aaKnown RBP12.9□□□□□ -0.34
PTPRF-205ENST00000414879 RSPH14Q9UHP6 348 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 DNAJC12Q9UKB3 198 aa12.9□□□□□ -0.34
PTPRF-205ENST00000414879 GH1P01241 217 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 VIMP08670 466 aaKnown RBP12.9□□□□□ -0.35
PTPRF-205ENST00000414879 ERICH1Q86X53 443 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 GIMAP7Q8NHV1 300 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 MXRA8Q9BRK3 442 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 MKNK1Q9BUB5 465 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 GOLPH3LQ9H4A5 285 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 POLLQ9UGP5 575 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 PPME1Q9Y570 386 aa12.9□□□□□ -0.35
PTPRF-205ENST00000414879 SPDYE2BA6NHP3 402 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 F8W8V4 182 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 POLRMTO00411 1230 aaKnown RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 SPDYE6P0CI01 402 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 EPHB4P54760 987 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 KCNH2Q12809 1159 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 CCDC6Q16204 474 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 DSTYKQ6XUX3 929 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 ZBTB33Q86T24 672 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 URGCPQ8TCY9 931 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 MAGOHBQ96A72 148 aaKnown RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 RBM41Q96IZ5 413 aaKnown RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 PSMB7Q99436 277 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 PSMD1Q99460 953 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 RTFDC1Q9BY42 306 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 POLR3FQ9H1D9 316 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 SLC38A10Q9HBR0 1119 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 RGPD1P0DJD0 1748 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 KIF28PB7ZC32 967 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 ICAM1P05362 532 aa12.89□□□□□ -0.35
PTPRF-205ENST00000414879 GCLCP48506 637 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-205ENST00000414879 SLMAPQ14BN4 828 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms