RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 AOPEPQ8N6M6 819 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 KLHDC9Q8NEP7 349 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 PIGOQ8TEQ8 1089 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 ATP6V0A1Q93050 837 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 DNAJC19Q96DA6 116 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 GLT1D1Q96MS3 346 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 GTPBP4Q9BZE4 634 aaKnown RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 BCAS3Q9H6U6 928 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 ZHX1Q9UKY1 873 aaPredicted RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 SYNRGQ9UMZ2 1314 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 ARHGEF35A5YM69 484 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 BECN2A8MW95 431 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 GOLGA6L19H0YKK7 550 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 ATG7O95352 703 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 XRCC6P12956 609 aaKnown RBP eCLIP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 IDEP14735 1019 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 YWHABP31946 246 aaKnown RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 DEKP35659 375 aaKnown RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 FAAP100Q0VG06 881 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 COASYQ13057 564 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 ACVR2BQ13705 512 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 KCNA10Q16322 511 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 LY6KQ17RY6 165 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 ARSHQ5FYA8 562 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 CELF3Q5SZQ8 465 aaKnown RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 CCDC62Q6P9F0 684 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 ABHD15Q6UXT9 468 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 CCDC60Q8IWA6 550 aaPredicted RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 CCDC65Q8IXS2 484 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 SMYD4Q8IYR2 804 aaPredicted RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 CCDC43Q96MW1 224 aaKnown RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 RUSC1Q9BVN2 902 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 KATNBL1Q9H079 304 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 KCND2Q9NZV8 630 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 GABBR1Q9UBS5 961 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 DBR1Q9UK59 544 aaKnown RBP12.51□□□□□ -0.41
LINC00539-201ENST00000411525 GDAQ9Y2T3 454 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 TELO2Q9Y4R8 837 aa12.51□□□□□ -0.41
LINC00539-201ENST00000411525 NPHP3-ACAD11A0A0J9YXS1 232 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 RBM47A0AV96 593 aaKnown RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 FRMD3A2A2Y4 597 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 BACH1O14867 736 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 IKBKBO14920 756 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 TIMP1P01033 207 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 C6orf222P0C671 652 aaPredicted RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 TXNP10599 105 aaKnown RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 CD44P16070 742 aaKnown RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 ITGB8P26012 769 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 ERCC5P28715 1186 aaPredicted RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 MYL5Q02045 173 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 EHHADHQ08426 723 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 CCSAPQ6IQ19 270 aaPredicted RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 RINT1Q6NUQ1 792 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 TAPT1Q6NXT6 567 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 MAFAQ8NHW3 353 aaPredicted RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 VTI1AQ96AJ9 217 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 REEP2Q9BRK0 252 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 COL25A1Q9BXS0 654 aaPredicted RBP12.5□□□□□ -0.41
LINC00539-201ENST00000411525 MLXIPQ9HAP2 919 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 PDGFCQ9NRA1 345 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 ANKEF1Q9NU02 776 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 PANK4Q9NVE7 773 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 CTNND2Q9UQB3 1225 aa12.5□□□□□ -0.41
LINC00539-201ENST00000411525 IGKV6D-21A0A0A0MT36 114 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 SMTNL1A8MU46 457 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 PPP1R3GB7ZBB8 358 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 ZBTB39O15060 712 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 TLR3O15455 904 aaKnown RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 ZNF862O60290 1169 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 TBCAO75347 108 aaKnown RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 FOSL2P15408 326 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 PPP1R2P41236 205 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 RARRES1P49788 294 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 GJA9P57773 515 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 TPM4P67936 248 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 PRKCEQ02156 737 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 CACNB1Q02641 598 aaPredicted RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 RAD51AP2Q09MP3 1159 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 PSMD2Q13200 908 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 PPIGQ13427 754 aaKnown RBP eCLIP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 STIM1Q13586 685 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 GIT2Q14161 759 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 CCDC144BQ3MJ40 725 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 COBLL1Q53SF7 1204 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 GNASQ5JWF2 1037 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 KLHL10Q6JEL2 608 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 MFSD5Q6N075 450 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 SWSAP1Q6NVH7 229 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 C1orf186Q6ZWK4 172 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 DHX37Q8IY37 1157 aaKnown RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 KIAA0895Q8NCT3 520 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 LENG1Q96BZ8 264 aaPredicted RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 UPF3AQ9H1J1 476 aaKnown RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 TTYH1Q9H313 450 aaPredicted RBP12.49□□□□□ -0.41
LINC00539-201ENST00000411525 ZNF302Q9NR11 478 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 CDH23Q9H251 3354 aa12.49□□□□□ -0.41
LINC00539-201ENST00000411525 A0A0U1RQG5 324 aaPredicted RBP12.48□□□□□ -0.41
LINC00539-201ENST00000411525 GSTTP1A0A1W2PQM5 241 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms