RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PPM1KQ8N3J5 372 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 CBWD1Q9BRT8 395 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 UBE2TQ9NPD8 197 aaPredicted RBP14.6□□□□□ -0.07
VPS54-203ENST00000409558 SPDYE2BA6NHP3 402 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 SPDYE6P0CI01 402 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 SLC35C1Q96A29 364 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 KLRG2A4D1S0 409 aaPredicted RBP14.6□□□□□ -0.07
VPS54-203ENST00000409558 TGFB1I1O43294 461 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 RAD51CO43502 376 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 ATP8B1O43520 1251 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 KRT13P13646 458 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 STAT1P42224 750 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 PDCLQ13371 301 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 BTBD6Q96KE9 485 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 CEP63Q96MT8 703 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 IDI2Q9BXS1 227 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 SERPINA10Q9UK55 444 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 VAV3Q9UKW4 847 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 ANO9A1A5B4 782 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 VGLL3A8MV65 326 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 HSF2BPO75031 334 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 DPEP1P16444 411 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 NOVP48745 357 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 TATDN1Q6P1N9 297 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 UBLCP1Q8WVY7 318 aaPredicted RBP14.6□□□□□ -0.07
VPS54-203ENST00000409558 PLCB1Q9NQ66 1216 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 COL20A1Q9P218 1284 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 NAGPAQ9UK23 515 aa14.6□□□□□ -0.07
VPS54-203ENST00000409558 KRIT1O00522 736 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 FOSP01100 380 aaPredicted RBP14.59□□□□□ -0.07
VPS54-203ENST00000409558 H2AFZP0C0S5 128 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 MAP2K1Q02750 393 aaPredicted RBP14.59□□□□□ -0.07
VPS54-203ENST00000409558 RASA3Q14644 834 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 ODF2Q5BJF6 829 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 FIGNQ5HY92 759 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 PADI6Q6TGC4 694 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 H2AFVQ71UI9 128 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 FAM76AQ8TAV0 307 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 HNRNPLLQ8WVV9 542 aaKnown RBP14.59□□□□□ -0.07
VPS54-203ENST00000409558 LAMB1P07942 1786 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 VPS36Q86VN1 386 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 SLC20A1Q8WUM9 679 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 TYW1Q9NV66 732 aaKnown RBP14.59□□□□□ -0.07
VPS54-203ENST00000409558 TELO2Q9Y4R8 837 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 TLDC2A0PJX2 215 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 EYA4O95677 639 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 GNA14O95837 355 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 XKR9Q5GH70 373 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 CFAP58Q5T655 872 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 FAM71BQ8TC56 605 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 FAM20AQ96MK3 541 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 GANQ9H2C0 597 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 KCNH7Q9NS40 1196 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 WNK3Q9BYP7 1800 aa14.59□□□□□ -0.07
VPS54-203ENST00000409558 ITGB5P18084 799 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 TNFAIP3P21580 790 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 PSMC2P35998 433 aaKnown RBP14.58□□□□□ -0.07
VPS54-203ENST00000409558 CCT5P48643 541 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 GALCP54803 685 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 MUM1L1Q5H9M0 696 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 ZFYVE27Q5T4F4 411 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 CHURC1Q8WUH1 139 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 MKL1Q969V6 931 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 FAM184BQ9ULE4 1060 aa14.58□□□□□ -0.07
VPS54-203ENST00000409558 ONECUT3O60422 494 aaPredicted RBP14.58□□□□□ -0.08
VPS54-203ENST00000409558 IBSPP21815 317 aaPredicted RBP14.58□□□□□ -0.08
VPS54-203ENST00000409558 ACTN2P35609 894 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 PRELPP51888 382 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 SPP2Q13103 211 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 CPNE8Q86YQ8 564 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 TTLL6Q8N841 843 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 TAAR1Q96RJ0 339 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 TEKT3Q9BXF9 490 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 GNGT1P63211 74 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 NAB2Q15742 525 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 WDR93Q6P2C0 686 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 EEPD1Q7L9B9 569 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 WNK4Q96J92 1243 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 GLT8D2Q9H1C3 349 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 TOPORSQ9NS56 1045 aaPredicted RBP14.58□□□□□ -0.08
VPS54-203ENST00000409558 CTTNBP2NLQ9P2B4 639 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 EMSYQ7Z589 1322 aa14.58□□□□□ -0.08
VPS54-203ENST00000409558 ATP2C2O75185 946 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 SSR1P43307 286 aaKnown RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 CEP85LQ5SZL2 805 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 IRF2BP2Q7Z5L9 587 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 ZKSCAN4Q969J2 545 aaPredicted RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 TRIM51Q9BSJ1 452 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 PI4K2AQ9BTU6 479 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 FOXN3O00409 490 aaPredicted RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 MTMR2Q13614 643 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 MESDQ14696 234 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 ASTE1Q2TB18 679 aaPredicted RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 RSBN1LQ6PCB5 846 aaPredicted RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 EXOC4Q96A65 974 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 DNAJC17Q9NVM6 304 aaKnown RBP14.57□□□□□ -0.08
VPS54-203ENST00000409558 STK32BQ9NY57 414 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 PTPN22Q9Y2R2 807 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 NR2E1Q9Y466 385 aa14.57□□□□□ -0.08
VPS54-203ENST00000409558 PLIN4Q96Q06 1357 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms