RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 C10orf71Q711Q0 1435 aa13.83□□□□□ -0.19
SHMT1-205ENST00000395684 FAM170AA1A519 330 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 SLC16A3O15427 465 aaKnown RBP13.83□□□□□ -0.2
SHMT1-205ENST00000395684 EVI5O60447 810 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 RPL13P26373 211 aaKnown RBP13.83□□□□□ -0.2
SHMT1-205ENST00000395684 AP3B2Q13367 1082 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 RNF187Q5TA31 235 aaPredicted RBP13.83□□□□□ -0.2
SHMT1-205ENST00000395684 VPS36Q86VN1 386 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 SLITRK6Q9H5Y7 841 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 INTUQ9ULD6 942 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 ATP8B3O60423 1300 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 GMNCA6NCL1 334 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 TBX3O15119 743 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 TRAPPC3O43617 180 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 BUB1BO60566 1050 aaPredicted RBP13.83□□□□□ -0.2
SHMT1-205ENST00000395684 FGGP02679 453 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 TAL1P17542 331 aaPredicted RBP13.83□□□□□ -0.2
SHMT1-205ENST00000395684 NPEPPSP55786 919 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 BIRC3Q13489 604 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 SLFN13Q68D06 897 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 RUFY4Q6ZNE9 571 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 GLYCTKQ8IVS8 523 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 SYCE1Q8N0S2 351 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 CEP89Q96ST8 783 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 DPH5Q9H2P9 285 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 RGL1Q9NZL6 768 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 PPP1R9AQ9ULJ8 1098 aa13.83□□□□□ -0.2
SHMT1-205ENST00000395684 NOVA2Q9UNW9 492 aaKnown RBP13.83□□□□□ -0.2
SHMT1-205ENST00000395684 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 H0YHG0 523 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 MSH4O15457 936 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 DHX9Q08211 1270 aaKnown RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 QPCTQ16769 361 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 SWT1Q5T5J6 900 aaKnown RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 DCAF12L1Q5VU92 463 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 APOBEC3HQ6NTF7 200 aaKnown RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 CCDC26Q8TAB7 109 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 SLC35G2Q8TBE7 412 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 DDX20Q9UHI6 824 aaKnown RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 GGA2Q9UJY4 613 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 VAV3Q9UKW4 847 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 IGSF9BQ9UPX0 1349 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 GTPBP10A4D1E9 387 aaKnown RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 EML1O00423 815 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 BACH1O14867 736 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 HLA-DOAP06340 250 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 GYS1P13807 737 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 FERP16591 822 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 HOXA10P31260 410 aaPredicted RBP13.82□□□□□ -0.2
SHMT1-205ENST00000395684 STAT1P42224 750 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 VPS72Q15906 364 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 ODF2Q5BJF6 829 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 SLC30A10Q6XR72 485 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 SIAH1Q8IUQ4 282 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 MKL1Q969V6 931 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 TRIM51Q9BSJ1 452 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 TRIM31Q9BZY9 425 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 AMFRQ9UKV5 643 aa13.82□□□□□ -0.2
SHMT1-205ENST00000395684 F8VZ95 297 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 MNAT1P51948 309 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 MAGOHP61326 146 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 PPP2R2AP63151 447 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 MTMR3Q13615 1198 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 USH1GQ495M9 461 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 ZC2HC1CQ53FD0 456 aaPredicted RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 AGBL2Q5U5Z8 902 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 RINT1Q6NUQ1 792 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 PIGOQ8TEQ8 1089 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 ATP8B4Q8TF62 1192 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 MAGOHBQ96A72 148 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 C8orf37Q96NL8 207 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 COA1Q9GZY4 146 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 LRRC4BQ9NT99 713 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 SUGT1Q9Y2Z0 365 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 ZMYM2Q9UBW7 1377 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 DDX3YO15523 660 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 TBCAO75347 108 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 ABCB4P21439 1286 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 NMT1P30419 496 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 COPB2P35606 906 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 SOX5P35711 763 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 PPATQ06203 517 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 ACTN3Q08043 901 aaPredicted RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 KSR1Q8IVT5 923 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 CCDC17Q96LX7 622 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 FAM20AQ96MK3 541 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 EIF2AK1Q9BQI3 630 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 GPR88Q9GZN0 384 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 TTC7AQ9ULT0 858 aaPredicted RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 UTP11Q9Y3A2 253 aaKnown RBP13.81□□□□□ -0.2
SHMT1-205ENST00000395684 RABGAP1Q9Y3P9 1069 aa13.81□□□□□ -0.2
SHMT1-205ENST00000395684 EYA4O95677 639 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 SREBF1P36956 1147 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 CACNB3P54284 484 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 COG2Q14746 738 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 DRAP1Q14919 205 aaPredicted RBP13.8□□□□□ -0.2
SHMT1-205ENST00000395684 ADAT2Q7Z6V5 191 aaKnown RBP13.8□□□□□ -0.2
SHMT1-205ENST00000395684 FAM186BQ8IYM0 893 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 DCAF4Q8WV16 495 aa13.8□□□□□ -0.2
SHMT1-205ENST00000395684 RAPGEF5Q92565 580 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms