RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 STX17P56962 302 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 FSTL1Q12841 308 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 FILIP1LQ4L180 1135 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 CST9Q5W186 159 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 SV2BQ7L1I2 683 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 GBA2Q9HCG7 927 aaPredicted RBP20.78■□□□□ 0.92
CCDC50-202ENST00000392456 FANCLQ9NW38 375 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 RBPJLQ9UBG7 517 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 LRRIQ3A6PVS8 624 aaPredicted RBP20.78■□□□□ 0.92
CCDC50-202ENST00000392456 DDX39AO00148 427 aaKnown RBP20.78■□□□□ 0.92
CCDC50-202ENST00000392456 PYGBP11216 843 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 CNTN2Q02246 1040 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 ITGB3BPQ13352 177 aaPredicted RBP20.78■□□□□ 0.92
CCDC50-202ENST00000392456 WDR24Q96S15 920 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 C7orf25Q9BPX7 421 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 SPATC1LQ9H0A9 340 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 STK17AQ9UEE5 414 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 MYO6Q9UM54 1294 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 ASTN1O14525 1302 aa20.78■□□□□ 0.92
CCDC50-202ENST00000392456 CYP2C8P10632 490 aa20.77■□□□□ 0.92
CCDC50-202ENST00000392456 MYL5Q02045 173 aa20.77■□□□□ 0.92
CCDC50-202ENST00000392456 TMC6Q7Z403 805 aa20.77■□□□□ 0.92
CCDC50-202ENST00000392456 CEP57Q86XR8 500 aa20.77■□□□□ 0.92
CCDC50-202ENST00000392456 TSPAN18Q96SJ8 248 aa20.77■□□□□ 0.92
CCDC50-202ENST00000392456 EIF2AK1Q9BQI3 630 aaKnown RBP20.77■□□□□ 0.92
CCDC50-202ENST00000392456 XPO4Q9C0E2 1151 aaKnown RBP20.77■□□□□ 0.92
CCDC50-202ENST00000392456 IKBKBO14920 756 aa20.77■□□□□ 0.91
CCDC50-202ENST00000392456 DHX15O43143 795 aaKnown RBP20.77■□□□□ 0.91
CCDC50-202ENST00000392456 GAS7O60861 476 aa20.77■□□□□ 0.91
CCDC50-202ENST00000392456 ATP9AO75110 1047 aa20.77■□□□□ 0.91
CCDC50-202ENST00000392456 BCAS4Q8TDM0 211 aa20.77■□□□□ 0.91
CCDC50-202ENST00000392456 EZH1Q92800 747 aaPredicted RBP20.77■□□□□ 0.91
CCDC50-202ENST00000392456 MAF1Q9H063 256 aa20.77■□□□□ 0.91
CCDC50-202ENST00000392456 UNC45AQ9H3U1 944 aa20.77■□□□□ 0.91
CCDC50-202ENST00000392456 ZBTB39O15060 712 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 SSBP05455 408 aaKnown RBP eCLIP20.76■□□□□ 0.91
CCDC50-202ENST00000392456 NR3C2P08235 984 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 CHMP4BP1P59074 171 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 ASIC1P78348 528 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 SNAPC2Q13487 334 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 SAMD3Q8N6K7 520 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 MS4A4AQ96JQ5 239 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 MOV10L1Q9BXT6 1211 aaKnown RBP20.76■□□□□ 0.91
CCDC50-202ENST00000392456 MAGEF1Q9HAY2 307 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 JADE2Q9NQC1 790 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.76■□□□□ 0.91
CCDC50-202ENST00000392456 RGS20O76081 388 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 FCER1AP12319 257 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 RPA1P27694 616 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 CTTNQ14247 550 aaKnown RBP20.76■□□□□ 0.91
CCDC50-202ENST00000392456 B3GNT9Q6UX72 402 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 VSIG10LQ86VR7 867 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 HSD17B14Q9BPX1 270 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 BCAS3Q9H6U6 928 aa20.76■□□□□ 0.91
CCDC50-202ENST00000392456 WRAP73Q9P2S5 460 aaPredicted RBP20.76■□□□□ 0.91
CCDC50-202ENST00000392456 NPHP3-ACAD11A0A0J9YXS1 232 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 MEFVO15553 781 aaPredicted RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 ITGBL1O95965 494 aaPredicted RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 PRCPP42785 496 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 STK4Q13043 487 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 PPP2R5CQ13362 524 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 MTMR1Q13613 665 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 ZNF658Q5TYW1 1059 aaPredicted RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 FASTKD5Q7L8L6 764 aaKnown RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 SRGAP1Q7Z6B7 1085 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 RIOX2Q8IUF8 465 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 DDX12PQ92771 950 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 PLEKHG4BQ96PX9 1271 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 GBP3Q9H0R5 595 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 VIPAS39Q9H9C1 493 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 AGO4Q9HCK5 861 aaKnown RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 IFNKQ9P0W0 207 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 TESPA1A2RU30 521 aaPredicted RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 ZSCAN9O15535 394 aaPredicted RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 KIAA0754O94854 1291 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 SLITRK3O94933 977 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 RHOBTB3O94955 611 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 CACNB1Q02641 598 aaPredicted RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 SPATA21Q7Z572 469 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 FAM228AQ86W67 206 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 ANKRD35Q8N283 1001 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 SLX1AQ9BQ83 275 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.75■□□□□ 0.912e-6■■■■■ 117.5
CCDC50-202ENST00000392456 SAMSN1Q9NSI8 373 aaKnown RBP20.75■□□□□ 0.91
CCDC50-202ENST00000392456 NFE2L3Q9Y4A8 694 aa20.75■□□□□ 0.91
CCDC50-202ENST00000392456 KDM3AQ9Y4C1 1321 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 PLA2G4BP0C869 781 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 BCRP11274 1271 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 GBP2P32456 591 aaPredicted RBP20.74■□□□□ 0.91
CCDC50-202ENST00000392456 ARHGAP25P42331 645 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 THEMIS2Q5TEJ8 643 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 MB21D1Q8N884 522 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 DYDC2Q96IM9 177 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 NT5C3AQ9H0P0 336 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 RABGAP1Q9Y3P9 1069 aa20.74■□□□□ 0.91
CCDC50-202ENST00000392456 MYL1P05976 194 aa20.73■□□□□ 0.91
CCDC50-202ENST00000392456 PABPC4Q13310 644 aaKnown RBP eCLIP20.73■□□□□ 0.912e-7■■□□□ 13.1
CCDC50-202ENST00000392456 PLCB4Q15147 1175 aa20.73■□□□□ 0.91
CCDC50-202ENST00000392456 SNCBQ16143 134 aa20.73■□□□□ 0.91
CCDC50-202ENST00000392456 CCDC40Q4G0X9 1142 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms