RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CLDN3O15551 220 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 MED24O75448 989 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 ITGB5P18084 799 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 HNRNPH2P55795 449 aaKnown RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 FAM110CQ1W6H9 321 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 HSDL1Q3SXM5 330 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 MSTO1Q9BUK6 570 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 ALDH8A1Q9H2A2 487 aaPredicted RBP11.26□□□□□ -0.61
COL6A3-205ENST00000392004 BCAS3Q9H6U6 928 aa11.26□□□□□ -0.61
COL6A3-205ENST00000392004 A0A0G2JLL6 359 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 EML1O00423 815 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 LRRN2O75325 713 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 GJB1P08034 283 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 XRCC5P13010 732 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 SFNP31947 248 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 ACOT2P49753 483 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 GOLGA8FQ08AF8 430 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 GOLGA8DPQ0D2H9 430 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 LAMC2Q13753 1193 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 PPP2R5AQ15172 486 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 SKIDA1Q1XH10 827 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 PRRT2Q7Z6L0 340 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 MLKLQ8NB16 471 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 KLK14Q9P0G3 267 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 FBXO2Q9UK22 296 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 INSRRP14616 1297 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 SREBF1P36956 1147 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 NLRP12P59046 1061 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 PAN2Q504Q3 1202 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 XKR3Q5GH77 459 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 VPS36Q86VN1 386 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 ZNF354CQ86Y25 554 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 HACE1Q8IYU2 909 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 MAP3K14Q99558 947 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 OSMRQ99650 979 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 JPH2Q9BR39 696 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 JADE2Q9NQC1 790 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 CREBZFQ9NS37 354 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 SAMSN1Q9NSI8 373 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 PHLDB2Q86SQ0 1253 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 IPO4Q8TEX9 1081 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 AGXT2Q9BYV1 514 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 XPO4Q9C0E2 1151 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 AKR1A1P14550 325 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 UBA1P22314 1058 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 FSCN1Q16658 493 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 GLRA4Q5JXX5 417 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 DHX40Q8IX18 779 aaKnown RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 MICALL1Q8N3F8 863 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 MAN1B1Q9UKM7 699 aa11.25□□□□□ -0.61
COL6A3-205ENST00000392004 ZNF214Q9UL59 606 aaPredicted RBP11.25□□□□□ -0.61
COL6A3-205ENST00000392004 NHSQ6T4R5 1651 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 A0A1W2PQ27 194 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 A0A1W2PQ64 194 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 A0A1W2PQD8 194 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 ZSCAN12O43309 604 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 H2AFXP16104 143 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-205ENST00000392004 GJA5P36382 358 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 RNASE9P60153 205 aaKnown RBP11.24□□□□□ -0.61
COL6A3-205ENST00000392004 ETF1P62495 437 aaKnown RBP11.24□□□□□ -0.61
COL6A3-205ENST00000392004 FSTL1Q12841 308 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 MORC3Q14149 939 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 ZNF296Q8WUU4 475 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-205ENST00000392004 DNAJB3Q8WWF6 145 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 CHD4Q14839 1912 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 RAG1P15918 1043 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 FANCCQ00597 558 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 HAUS6Q7Z4H7 955 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 RAD54LQ92698 747 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 REEP2Q9BRK0 252 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 L2HGDHQ9H9P8 463 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 TUBE1Q9UJT0 475 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 GABRQQ9UN88 632 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 GHRP10912 638 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 CPT1AP50416 773 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 C1QTNF8P60827 252 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 APBB1IPQ7Z5R6 666 aaPredicted RBP11.24□□□□□ -0.61
COL6A3-205ENST00000392004 MCPH1Q8NEM0 835 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 ANKS1AQ92625 1134 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 ZNF446Q9NWS9 450 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 PCDH10Q9P2E7 1040 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 STK17AQ9UEE5 414 aa11.24□□□□□ -0.61
COL6A3-205ENST00000392004 SYNJ2BP-COX16A0A087WUM0 186 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 MKRN4PQ13434 485 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-205ENST00000392004 VSIG10LQ86VR7 867 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 IGSF22Q8N9C0 903 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 ARRDC4Q8NCT1 418 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 SOCS4Q8WXH5 440 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 CTNNBL1Q8WYA6 563 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-205ENST00000392004 RABGGTAQ92696 567 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 FAM167AQ96KS9 214 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 TARS2Q9BW92 718 aaKnown RBP11.23□□□□□ -0.61
COL6A3-205ENST00000392004 NACA2Q9H009 215 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 COX16Q9P0S2 106 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 MYMKA6NI61 221 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 ATP1A3P13637 1013 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 SSTR3P32745 418 aaPredicted RBP11.23□□□□□ -0.61
COL6A3-205ENST00000392004 RESP18Q5W5W9 173 aa11.23□□□□□ -0.61
COL6A3-205ENST00000392004 E4F1Q66K89 784 aaPredicted RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms