RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 CALR3Q96L12 384 aaKnown RBP27.59■■■□□ 2.01
C9orf40-201ENST00000376854 FAM107BQ9H098 131 aa27.59■■■□□ 2.01
C9orf40-201ENST00000376854 TDRD3Q9H7E2 651 aaKnown RBP27.59■■■□□ 2.01
C9orf40-201ENST00000376854 FERP16591 822 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 POLD1P28340 1107 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 KDM7AQ6ZMT4 941 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 MYCT1Q8N699 235 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 EIF1ADQ8N9N8 165 aaKnown RBP27.58■■■□□ 2.01
C9orf40-201ENST00000376854 U2AF1L4Q8WU68 220 aaKnown RBP27.58■■■□□ 2.01
C9orf40-201ENST00000376854 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.58■■■□□ 2.01
C9orf40-201ENST00000376854 NOC2LQ9Y3T9 749 aaKnown RBP27.58■■■□□ 2.01
C9orf40-201ENST00000376854 KIF13BQ9NQT8 1826 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 A0A0A6YYK5 440 aaPredicted RBP27.58■■■□□ 2.01
C9orf40-201ENST00000376854 GFPT2O94808 682 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 ZBTB48P10074 688 aaPredicted RBP27.58■■■□□ 2.01
C9orf40-201ENST00000376854 AOC3Q16853 763 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 SLFN11Q7Z7L1 901 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 EFCAB13Q8IY85 973 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 FAM186BQ8IYM0 893 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 PPM1EQ8WY54 764 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 IKZF4Q9H2S9 585 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 INTUQ9ULD6 942 aa27.58■■■□□ 2.01
C9orf40-201ENST00000376854 SLX4Q8IY92 1834 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 EIF3DO15371 548 aaKnown RBP eCLIP27.57■■■□□ 2
C9orf40-201ENST00000376854 NMT1P30419 496 aaKnown RBP27.57■■■□□ 2
C9orf40-201ENST00000376854 PSMC2P35998 433 aaKnown RBP27.57■■■□□ 2
C9orf40-201ENST00000376854 STAT1P42224 750 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 CUL1Q13616 776 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 RRP1BQ14684 758 aaKnown RBP27.57■■■□□ 2
C9orf40-201ENST00000376854 KCTD17Q8N5Z5 321 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 HSD17B14Q9BPX1 270 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 PLAAQ9Y263 795 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 ZMYM2Q9UBW7 1377 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 IGLV3-22A0A075B6J6 115 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 PLSCR1O15162 318 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 DAAM2Q86T65 1068 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 TPH2Q8IWU9 490 aa27.57■■■□□ 2
C9orf40-201ENST00000376854 SUCLA2Q9P2R7 463 aaPredicted RBP27.57■■■□□ 2
C9orf40-201ENST00000376854 SART1O43290 800 aaKnown RBP27.56■■■□□ 2
C9orf40-201ENST00000376854 PPP1R12BO60237 982 aaPredicted RBP27.56■■■□□ 2
C9orf40-201ENST00000376854 GH2P01242 217 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 ECHS1P30084 290 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 ZC2HC1CQ53FD0 456 aaPredicted RBP27.56■■■□□ 2
C9orf40-201ENST00000376854 BTNL9Q6UXG8 535 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 SLC30A10Q6XR72 485 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 MAATS1Q7Z4T9 603 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 SYCE1Q8N0S2 351 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 RNPC3Q96LT9 517 aaKnown RBP27.56■■■□□ 2
C9orf40-201ENST00000376854 STXBP5LQ9Y2K9 1186 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 PIK3CDO00329 1044 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 HDLBPQ00341 1268 aaKnown RBP27.56■■■□□ 2
C9orf40-201ENST00000376854 SPICE1Q8N0Z3 855 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 ATP6V1G3Q96LB4 118 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 TUFT1Q9NNX1 390 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 PRR12Q9ULL5 1215 aa27.56■■■□□ 2
C9orf40-201ENST00000376854 KRIT1O00522 736 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 CHMP2AO43633 222 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 EVI5O60447 810 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 NPM3O75607 178 aaKnown RBP27.55■■■□□ 2
C9orf40-201ENST00000376854 SLITRK3O94933 977 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 NR1D1P20393 614 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 C1orf186Q6ZWK4 172 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 OTOP1Q7RTM1 612 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 DYDC2Q96IM9 177 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 ZNF646O15015 1829 aaPredicted RBP27.55■■■□□ 2
C9orf40-201ENST00000376854 H0YIN7 160 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 SLC15A2Q16348 729 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 RBM26Q5T8P6 1007 aaKnown RBP27.55■■■□□ 2
C9orf40-201ENST00000376854 C1orf131Q8NDD1 294 aaKnown RBP27.55■■■□□ 2
C9orf40-201ENST00000376854 WDR18Q9BV38 432 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 DDX47Q9H0S4 455 aaKnown RBP27.55■■■□□ 2
C9orf40-201ENST00000376854 FAM169AQ9Y6X4 670 aa27.55■■■□□ 2
C9orf40-201ENST00000376854 CCDC188H7C350 402 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 ZEB2O60315 1214 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 SOX5P35711 763 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 GALCP54803 685 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 NPEPPSP55786 919 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 FKBP1AP62942 108 aaKnown RBP27.54■■■□□ 2
C9orf40-201ENST00000376854 CEP85LQ5SZL2 805 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 EMC10Q5UCC4 262 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 LRCH2Q5VUJ6 765 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 NT5DC3Q86UY8 548 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 DDX42Q86XP3 938 aaKnown RBP eCLIP27.54■■■□□ 2
C9orf40-201ENST00000376854 RASGEF1CQ8N431 466 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 PROCA1Q8NCQ7 364 aaPredicted RBP27.54■■■□□ 2
C9orf40-201ENST00000376854 LNX1Q8TBB1 728 aaPredicted RBP27.54■■■□□ 2
C9orf40-201ENST00000376854 PARVGQ9HBI0 331 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 SERPINA10Q9UK55 444 aa27.54■■■□□ 2
C9orf40-201ENST00000376854 F8VZ95 297 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 ZBTB39O15060 712 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 A0A1W2PRG0 241 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 HMGB1P1B2RPK0 211 aaPredicted RBP27.53■■■□□ 2
C9orf40-201ENST00000376854 NDUFAB1O14561 156 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 HSD17B3P37058 310 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 COG2Q14746 738 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 NFIL3Q16649 462 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 KSR1Q8IVT5 923 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 SLC30A5Q8TAD4 765 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 SAMM50Q9Y512 469 aa27.53■■■□□ 2
C9orf40-201ENST00000376854 A0A087WUV0 522 aaPredicted RBP27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 833.1 ms