RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CRIP3Q6Q6R5 217 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 USP30Q70CQ3 517 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 GPR135Q8IZ08 494 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 RTKN2Q8IZC4 609 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 EXTL1Q92935 676 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 ZSWIM4Q9H7M6 989 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 AGO3Q9H9G7 860 aaKnown RBP3.36□□□□□ -1.87
VPS13A-206ENST00000376646 HS3ST3A1Q9Y663 406 aa3.36□□□□□ -1.87
VPS13A-206ENST00000376646 TRAF5O00463 557 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 OPA1O60313 960 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 RAD17O75943 681 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 MSX2P35548 267 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 KIF11P52732 1056 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 FOXL1Q12952 345 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 SAFB2Q14151 953 aaKnown RBP eCLIP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 USP39Q53GS9 565 aaKnown RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 ZCCHC8Q6NZY4 707 aaKnown RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 ZNF808Q8N4W9 903 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 SH3TC2Q8TF17 1288 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 SREK1Q8WXA9 508 aaKnown RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 PUF60Q9UHX1 559 aaKnown RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 ING1Q9UK53 422 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 PTPDC1A2A3K4 754 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 PLD2O14939 933 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 SDHAP31040 664 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 MEOX1P50221 254 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 ANTXR2P58335 489 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 SLC6A3Q01959 620 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 HGFACQ04756 655 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 PRKD1Q15139 912 aaPredicted RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 NRN1LQ496H8 165 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 PIK3R6Q5UE93 754 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 CXXC5Q7LFL8 322 aaKnown RBP3.35□□□□□ -1.87
VPS13A-206ENST00000376646 SCYL1Q96KG9 808 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 BOCQ9BWV1 1114 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 OR10A2Q9H208 303 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 PIF1Q9H611 641 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 FBXO10Q9UK96 956 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 ASB1Q9Y576 335 aa3.35□□□□□ -1.87
VPS13A-206ENST00000376646 NPIPB8E9PQR5 432 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 JMJD7P0C870 316 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 ALDH6A1Q02252 535 aaKnown RBP3.34□□□□□ -1.87
VPS13A-206ENST00000376646 KLF10Q13118 480 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 NFYCQ13952 458 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 SOGA3Q5TF21 947 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 OTOP1Q7RTM1 612 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 ZNF341Q9BYN7 854 aa3.34□□□□□ -1.87
VPS13A-206ENST00000376646 H2AFY2Q9P0M6 372 aaPredicted RBP3.34□□□□□ -1.87
VPS13A-206ENST00000376646 ASMTLO95671 621 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 PRLP01236 227 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 APPP05067 770 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 SLC9A1P19634 815 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 APEX1P27695 318 aaKnown RBP3.33□□□□□ -1.88
VPS13A-206ENST00000376646 IGFALSP35858 605 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 ATP2C1P98194 919 aaPredicted RBP3.33□□□□□ -1.88
VPS13A-206ENST00000376646 CCDC144BQ3MJ40 725 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 HS1BP3Q53T59 392 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 RNF207Q6ZRF8 634 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 DDX53Q86TM3 631 aaKnown RBP3.33□□□□□ -1.88
VPS13A-206ENST00000376646 CHST14Q8NCH0 376 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 NAF1Q96HR8 494 aaKnown RBP3.33□□□□□ -1.88
VPS13A-206ENST00000376646 PLA2G3Q9NZ20 509 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 TESMINQ9Y4I5 508 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 CCDC163A0A0D9SF12 145 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 C1SP09871 688 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 GRM7Q14831 915 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 KIAA1958Q8N8K9 716 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 CALML6Q8TD86 181 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 TLR9Q9NR96 1032 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 SLC30A1Q9Y6M5 507 aa3.33□□□□□ -1.88
VPS13A-206ENST00000376646 ACVRL1P37023 503 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 RIN1Q13671 783 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 PRAMEF9Q5VWM5 478 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 ESRP1Q6NXG1 681 aaKnown RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 CC2D1AQ6P1N0 951 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 POLNQ7Z5Q5 900 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SHCBP1Q8NEM2 672 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 IL17DQ8TAD2 202 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 EDAQ92838 391 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 MRFAP1L1Q96HT8 127 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 RPL10LQ96L21 214 aaKnown RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SORCS2Q96PQ0 1159 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 PCIF1Q9H4Z3 704 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SRRDQ9UH36 339 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 CD2APQ9Y5K6 639 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 RBM8AQ9Y5S9 174 aaKnown RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 C2orf78A6NCI8 922 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SLC26A4O43511 780 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 FZD7O75084 574 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 ASLP04424 464 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 GDF5P43026 501 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 PABPC4Q13310 644 aaKnown RBP eCLIP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 FOXE3Q13461 319 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 MYBPC3Q14896 1274 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 NFE2L2Q16236 605 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 TKFCQ3LXA3 575 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 FNDC3BQ53EP0 1204 aaKnown RBP3.32□□□□□ -1.88
VPS13A-206ENST00000376646 CREB3L3Q68CJ9 461 aa3.32□□□□□ -1.88
VPS13A-206ENST00000376646 SPTY2D1Q68D10 685 aaPredicted RBP3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms