RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 METTL22Q9BUU2 404 aaPredicted RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 BRD8Q9H0E9 1235 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 SH3TC1Q8TE82 1336 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 ADCY9O60503 1353 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 FAM135BQ49AJ0 1406 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 FAM170AA1A519 330 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 RBL2Q08999 1139 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 AASDHQ4L235 1098 aaPredicted RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 DPP8Q6V1X1 898 aaPredicted RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 RFWD2Q8NHY2 731 aa12.4□□□□□ -0.42
VPS13A-205ENST00000376636 GOLGA4Q13439 2230 aaKnown RBP12.4□□□□□ -0.42
VPS13A-205ENST00000376636 M0R3G1 203 aa12.4□□□□□ -0.43
VPS13A-205ENST00000376636 PSMA2P25787 234 aa12.4□□□□□ -0.43
VPS13A-205ENST00000376636 PTGDRQ13258 359 aa12.4□□□□□ -0.43
VPS13A-205ENST00000376636 PRPF18Q99633 342 aaKnown RBP12.4□□□□□ -0.43
VPS13A-205ENST00000376636 GMNCA6NCL1 334 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 FOSP01100 380 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 LRFN2Q9ULH4 789 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ZMYM3Q14202 1370 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ATP10DQ9P241 1426 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 SNAP25P60880 206 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 RWDD4Q6NW29 188 aaKnown RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 SOX13Q9UN79 622 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 AURKCQ9UQB9 309 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 RGS12O14924 1447 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 FMNL1O95466 1100 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 CLCN6P51797 869 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 LVRNQ6Q4G3 990 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TMEM63CQ9P1W3 806 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 NFU1Q9UMS0 254 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 GNPATO15228 680 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 SYNJ1O43426 1573 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ZSCAN20P17040 1043 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 GANCQ8TET4 914 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ASZ1Q8WWH4 475 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 BABAM1Q9NWV8 329 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 UVRAGQ9P2Y5 699 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TARSL2A2RTX5 802 aaKnown RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 CLK1P49759 484 aaKnown RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 SLC39A6Q13433 755 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 BBS9Q3SYG4 887 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 DAB2IPQ5VWQ8 1189 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TGFBRAP1Q8WUH2 860 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 PLEKHA8Q96JA3 519 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TSSK1BQ9BXA7 367 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 C5orf58C9J3I9 102 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ALDH1B1P30837 517 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 PDCLQ13371 301 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TTC23LQ6PF05 361 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 FAM133AQ8N9E0 248 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 FTOQ9C0B1 505 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 H2AFY2Q9P0M6 372 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 GOLGA8SH3BPF8 625 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 NFIBO00712 420 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TCP10Q12799 353 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ZNF658Q5TYW1 1059 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 RBM46Q8TBY0 533 aaKnown RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 PARD6BQ9BYG5 372 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 KLC4Q9NSK0 619 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 KLHL8Q9P2G9 620 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 MTRF1O75570 445 aaKnown RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 FAM107AO95990 144 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 COQ7Q99807 217 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 MAP3K13O43283 966 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 TFAMQ00059 246 aaKnown RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 COG1Q8WTW3 980 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 FOXP1Q9H334 677 aaPredicted RBP12.39□□□□□ -0.43
VPS13A-205ENST00000376636 ETNK1Q9HBU6 452 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 KMT5AQ9NQR1 393 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 PCDHA13Q9Y5I0 950 aa12.39□□□□□ -0.43
VPS13A-205ENST00000376636 MIF4GDA9UHW6 222 aaKnown RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 TRIM13O60858 407 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 AHI1Q8N157 1196 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 CDHR1Q96JP9 859 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 ARL2BPQ9Y2Y0 163 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 CAPZA2P47755 286 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 C16orf62Q7Z3J2 963 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NIM1KQ8IY84 436 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 FAM227BQ96M60 508 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 A0A1W2PQ27 194 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 A0A1W2PQ64 194 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 A0A1W2PQD8 194 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 GSPT1P15170 499 aaKnown RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 PSMD2Q13200 908 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 TRIM63Q969Q1 353 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NUP160Q12769 1436 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 COBLO75128 1261 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 RTL3Q8N8U3 475 aaKnown RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 KRCC1Q9NPI7 259 aaPredicted RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NBPF26B4DH59 902 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 FOXP2O15409 715 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 PPP6R2O75170 966 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 FGGP02679 453 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NDUFA5Q16718 116 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 NBPF15Q8N660 670 aa12.38□□□□□ -0.43
VPS13A-205ENST00000376636 UBE2TQ9NPD8 197 aaPredicted RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 ADD3Q9UEY8 706 aaKnown RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 POLR3AO14802 1390 aaPredicted RBP12.38□□□□□ -0.43
VPS13A-205ENST00000376636 GCFC2P16383 781 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms