RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 RAPGEF5Q92565 580 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 ZSWIM6Q9HCJ5 1215 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 CDC42BPAQ5VT25 1732 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 UBN2Q6ZU65 1347 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 MMEP08473 750 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 MARK3P27448 753 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 ADD1P35611 737 aaKnown RBP13.32□□□□□ -0.28
VPS13A-204ENST00000376634 AARS2Q5JTZ9 985 aaKnown RBP13.32□□□□□ -0.28
VPS13A-204ENST00000376634 ULK4Q96C45 1275 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 MYO1DO94832 1006 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 BLVRAP53004 296 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 MRPS15P82914 257 aaKnown RBP13.32□□□□□ -0.28
VPS13A-204ENST00000376634 OTULINQ96BN8 352 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 ZFP69BQ9UJL9 534 aa13.32□□□□□ -0.28
VPS13A-204ENST00000376634 PPP6R2O75170 966 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 HSPA1AP0DMV8 641 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 HSPA1BP0DMV9 641 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 IREB2P48200 963 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PSMD2Q13200 908 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 DYNC1I2Q13409 638 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 EDEM3Q9BZQ6 932 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PIK3R2O00459 728 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 CLIC2O15247 247 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 FTCDO95954 541 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 CARSP49589 748 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 EFTUD2Q15029 972 aaKnown RBP eCLIP13.31□□□□□ -0.282e-7■■■■□ 23.8
VPS13A-204ENST00000376634 TJAP1Q5JTD0 557 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 SYT2Q8N9I0 419 aaPredicted RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 NDE1Q9NXR1 346 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 ZNF229Q9UJW7 825 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 WBP4O75554 376 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PDHA1P08559 390 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PSMC1P62191 440 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 HIPK4Q8NE63 616 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 AFG1LQ8WV93 481 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 FAM96AQ9H5X1 160 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 CHD1O14646 1710 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 ATP8B1O43520 1251 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 WASHC5Q12768 1159 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 SYDE2Q5VT97 1194 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 BTBD6Q96KE9 485 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 THAP9Q9H5L6 903 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 CHL1O00533 1208 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 APOA1P02647 267 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PPP6R3Q5H9R7 873 aaPredicted RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 SLC4A7Q9Y6M7 1214 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 ARID1BQ8NFD5 2236 aaPredicted RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 LBRQ14739 615 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 FBXO18Q8NFZ0 1043 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PCIF1Q9H4Z3 704 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 KANSL2Q9H9L4 492 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 KPNA7A9QM74 516 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PRR23D1E9PI22 279 aaPredicted RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PRR23D2P0DMB1 279 aaPredicted RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 EIF4A3P38919 411 aaKnown RBP13.31□□□□□ -0.28
VPS13A-204ENST00000376634 BAG6P46379 1132 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 URGCPQ8TCY9 931 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 SENP1Q9P0U3 644 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 MOSPD1Q9UJG1 213 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 SOWAHDA6NJG2 315 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PLCG1P19174 1290 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 UBXN2AP68543 259 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PDXDC2PQ6P474 469 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 PANX2Q96RD6 677 aa13.31□□□□□ -0.28
VPS13A-204ENST00000376634 LGR6Q9HBX8 967 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 GINM1Q9NU53 330 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 RASA4BC9J798 803 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 RASA4O43374 803 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 DNAJC6O75061 913 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 FGGP02679 453 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 CHRNDQ07001 517 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 NBPF9Q3BBW0 867 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 GIMAP8Q8ND71 665 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 TTLL11Q8NHH1 800 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 ADA2Q9NZK5 511 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 AARSP49588 968 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 CAV1Q03135 178 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 RARS2Q5T160 578 aaKnown RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 LRRC31Q6UY01 552 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 ABT1Q9ULW3 272 aaKnown RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 VCPP55072 806 aaKnown RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 SLC7A5Q01650 507 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 OR6B2Q6IFH4 312 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 CEP152O94986 1710 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 ZNF699Q32M78 642 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 RAB42Q8N4Z0 105 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 OLFM3Q96PB7 478 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 SAMD9Q5K651 1589 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 PRPF4O43172 522 aaKnown RBP eCLIP13.3□□□□□ -0.282e-6■■□□□ 14
VPS13A-204ENST00000376634 PLEKHM3Q6ZWE6 761 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 CATSPER3Q86XQ3 398 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 PHF21AQ96BD5 680 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 AP1M1Q9BXS5 423 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 FARP1Q9Y4F1 1045 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-204ENST00000376634 TSPY1Q01534 308 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 SLC26A7Q8TE54 656 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 PPP1R16BQ96T49 567 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 SLC7A5P2Q9GIP4 190 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 ARHGAP26Q9UNA1 814 aa13.3□□□□□ -0.28
VPS13A-204ENST00000376634 PODXLO00592 558 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms