RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 A1CFQ9NQ94 594 aaKnown RBP17.82■□□□□ 0.44
SDC4-201ENST00000372733 FAM114A2Q9NRY5 505 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 PNMA2Q9UL42 364 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 PPP1R9AQ9ULJ8 1098 aa17.82■□□□□ 0.44
SDC4-201ENST00000372733 MPHOSPH10O00566 681 aaKnown RBP17.81■□□□□ 0.44
SDC4-201ENST00000372733 PDXKO00764 312 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 EVI5O60447 810 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 CAND2O75155 1236 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 IL1R1P14778 569 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 ABCB4P21439 1286 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 IBSPP21815 317 aaPredicted RBP17.81■□□□□ 0.44
SDC4-201ENST00000372733 QRICH1Q2TAL8 776 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 PRR16Q569H4 304 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 CHADLQ6NUI6 762 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 FAM163AQ96GL9 167 aaPredicted RBP17.81■□□□□ 0.44
SDC4-201ENST00000372733 P2RX7Q99572 595 aaKnown RBP17.81■□□□□ 0.44
SDC4-201ENST00000372733 SWAP70Q9UH65 585 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 ZNF831Q5JPB2 1677 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 F8W031 263 aaPredicted RBP17.81■□□□□ 0.44
SDC4-201ENST00000372733 SHBGP04278 402 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 DRD4P21917 467 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 ANXA13P27216 316 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 CDR1P51861 262 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 CYP4A11Q02928 519 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 CXorf56Q9H5V9 222 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 ERVK-5Q9HDB9 667 aa17.81■□□□□ 0.44
SDC4-201ENST00000372733 TYW1Q9NV66 732 aaKnown RBP17.81■□□□□ 0.44
SDC4-201ENST00000372733 PPFIA2O75334 1257 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 GCNT3O95395 438 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 SPATA31C1P0DKV0 1188 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 SCTRP47872 440 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 SF3A3Q12874 501 aaKnown RBP eCLIP17.8■□□□□ 0.44
SDC4-201ENST00000372733 ZNF211Q13398 564 aaPredicted RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 CYB5D1Q6P9G0 228 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 CPLX4Q7Z7G2 160 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 TLCD1Q96CP7 247 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 RUSC1Q9BVN2 902 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 DDX3YO15523 660 aaKnown RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 FERP16591 822 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 RDXP35241 583 aaKnown RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 GPATCH4Q5T3I0 446 aaKnown RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 GKAP1Q5VSY0 366 aaPredicted RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 FUKQ8N0W3 1084 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 SYT2Q8N9I0 419 aaPredicted RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 CNBD1Q8NA66 436 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 SLC35G2Q8TBE7 412 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 ETNPPLQ8TBG4 499 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 NAP1L4Q99733 375 aaKnown RBP17.8■□□□□ 0.44
SDC4-201ENST00000372733 TXLNGYQ9BZA5 131 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 GOPCQ9HD26 462 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 GGA1Q9UJY5 639 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 INTUQ9ULD6 942 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 DNM3Q9UQ16 869 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 PCDHA1Q9Y5I3 950 aa17.8■□□□□ 0.44
SDC4-201ENST00000372733 ATP8B3O60423 1300 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 SPDYE3A6NKU9 549 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 SHMT1P34896 483 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 PTENP60484 403 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 RC3H1Q5TC82 1133 aaKnown RBP17.79■□□□□ 0.44
SDC4-201ENST00000372733 SLF2Q8IX21 1173 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 GLG1Q92896 1179 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 ARHGEF26Q96DR7 871 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 XPO6Q96QU8 1125 aaKnown RBP17.79■□□□□ 0.44
SDC4-201ENST00000372733 EPB41L4BQ9H329 900 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 NCANO14594 1321 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 OPLAHO14841 1288 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 POLD1P28340 1107 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 STAT1P42224 750 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 NPEPPSP55786 919 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 ARHGAP4P98171 946 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 DR1Q01658 176 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 SLFN12Q8IYM2 578 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 RFFLQ8WZ73 363 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 BHMT2Q9H2M3 363 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 METTL14Q9HCE5 456 aaKnown RBP17.79■□□□□ 0.44
SDC4-201ENST00000372733 SERPINB13Q9UIV8 391 aa17.79■□□□□ 0.44
SDC4-201ENST00000372733 MYO3BQ8WXR4 1341 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SMIM23A6NLE4 172 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SFI1A8K8P3 1242 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SLC16A3O15427 465 aaKnown RBP17.78■□□□□ 0.44
SDC4-201ENST00000372733 CTNND1O60716 968 aaKnown RBP17.78■□□□□ 0.44
SDC4-201ENST00000372733 FAM98CQ17RN3 349 aaKnown RBP17.78■□□□□ 0.44
SDC4-201ENST00000372733 PARP9Q8IXQ6 854 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SLC30A5Q8TAD4 765 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 RPGRQ92834 1020 aaKnown RBP17.78■□□□□ 0.44
SDC4-201ENST00000372733 MBOAT7Q96N66 472 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 RAB17Q9H0T7 212 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 ZDHHC18Q9NUE0 388 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 CYP3A7-CYP3A51PA0A087WV96 503 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 TAL1P17542 331 aaPredicted RBP17.78■□□□□ 0.44
SDC4-201ENST00000372733 CYP3A7P24462 503 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SOX5P35711 763 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SNAP25P60880 206 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SNCBQ16143 134 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 UBAP2Q5T6F2 1119 aaKnown RBP17.78■□□□□ 0.44
SDC4-201ENST00000372733 BARGINQ6ZT62 677 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 FAM228AQ86W67 206 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 HVCN1Q96D96 273 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 CHMP6Q96FZ7 201 aa17.78■□□□□ 0.44
SDC4-201ENST00000372733 SELENOSQ9BQE4 189 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms