RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 ZDHHC9Q9Y397 364 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 TRPV2Q9Y5S1 764 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 GBF1Q92538 1859 aa16.85■□□□□ 0.29
SMPDL3A-201ENST00000368440 PARNO95453 639 aaKnown RBP16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 GHRP10912 638 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 RASIP1Q5U651 963 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 NME8Q8N427 588 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 HERVK_113Q902F9 699 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 ZNF668Q96K58 619 aaPredicted RBP16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 RAB34Q9BZG1 259 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 MICAL3Q7RTP6 2002 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 SOX1O00570 391 aaPredicted RBP16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 BMP15O95972 392 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 LPIN1Q14693 890 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 KIZQ2M2Z5 673 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 FBXO47Q5MNV8 452 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 IER5Q5VY09 327 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 HAUS3Q68CZ6 603 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 OTUD6AQ7L8S5 288 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 DBF4BQ8NFT6 615 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 CELF4Q9BZC1 486 aaKnown RBP16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 DHX33Q9H6R0 707 aaKnown RBP16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 ANKEF1Q9NU02 776 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 AKT3Q9Y243 479 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 GINS2Q9Y248 185 aa16.84■□□□□ 0.29
SMPDL3A-201ENST00000368440 RPLP2P05387 115 aaKnown RBP16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 MARCKSP29966 332 aaPredicted RBP16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 RARRES1P49788 294 aa16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 PLEKHG4Q58EX7 1191 aa16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 FAM109BQ6ICB4 259 aaPredicted RBP16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 CNKSR3Q6P9H4 555 aa16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 TMEM40Q8WWA1 233 aa16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 AGO3Q9H9G7 860 aaKnown RBP16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 TFIP11Q9UBB9 837 aaKnown RBP16.83■□□□□ 0.28
SMPDL3A-201ENST00000368440 ZBBXA8MT70 800 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 M0QZ92 97 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 GPR32O75388 356 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 BRD1O95696 1058 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 PDIA4P13667 645 aaKnown RBP16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 POLGP54098 1239 aaPredicted RBP16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 MAP7D2Q96T17 732 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 XPNPEP1Q9NQW7 623 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 DDX19AQ9NUU7 478 aaKnown RBP16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 FBXO2Q9UK22 296 aaPredicted RBP16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 KIAA1024Q9UPX6 916 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 KDM3AQ9Y4C1 1321 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 TMOD1P28289 359 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 NLRP11P59045 1033 aaKnown RBP16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 EMC2Q15006 297 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 KRT79Q5XKE5 535 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 SLC7A3Q8WY07 619 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 NACC1Q96RE7 527 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 OSMRQ99650 979 aa16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 IFIH1Q9BYX4 1025 aaKnown RBP16.82■□□□□ 0.28
SMPDL3A-201ENST00000368440 ACTN1P12814 892 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 CD52P31358 61 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 RFC5P40937 340 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 NASPP49321 788 aaPredicted RBP16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 GPC3P51654 580 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 LRIT3Q3SXY7 679 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 TSHZ1Q6ZSZ6 1077 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 KCNK18Q7Z418 384 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 KSR1Q8IVT5 923 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 TMEM143Q96AN5 459 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 CHAMP1Q96JM3 812 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 CLIC6Q96NY7 704 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 PNMA5Q96PV4 448 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 ADAMTS10Q9H324 1103 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 DBR1Q9UK59 544 aaKnown RBP16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 PPME1Q9Y570 386 aa16.81■□□□□ 0.28
SMPDL3A-201ENST00000368440 GRXCR1A8MXD5 290 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 E9PMD0 336 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 USO1O60763 962 aaKnown RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 XRCC6P12956 609 aaKnown RBP eCLIP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 MUTP22033 750 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 GRB10Q13322 594 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 SLC39A14Q15043 492 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 ZRSR1Q15695 479 aaKnown RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 SPECC1Q5M775 1068 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 LRCH3Q96II8 777 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 CCDC43Q96MW1 224 aaKnown RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 PLIN2Q99541 437 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 SUCLA2Q9P2R7 463 aaPredicted RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 NOC2LQ9Y3T9 749 aaKnown RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 WDR5P61964 334 aaKnown RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 USP49Q70CQ1 688 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 CABP7Q86V35 215 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 RHPN2Q8IUC4 686 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 LINC00301Q8NCQ3 95 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 LRRC15Q8TF66 581 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 SEPT8Q92599 483 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 ZNF396Q96N95 335 aaPredicted RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 MTRQ99707 1265 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 JPH2Q9BR39 696 aaPredicted RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 CSRNP2Q9H175 543 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 SRPRBQ9Y5M8 271 aaKnown RBP16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 STK24Q9Y6E0 443 aa16.8■□□□□ 0.28
SMPDL3A-201ENST00000368440 BAIAP3O94812 1187 aa16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 LONP1P36776 959 aaKnown RBP16.79■□□□□ 0.28
SMPDL3A-201ENST00000368440 DNM2P50570 870 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms