RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 DUX4L6P0CJ89 424 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 DUX4L7P0CJ90 424 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ASPRV1Q53RT3 343 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 BEND6Q5SZJ8 279 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 LINC00301Q8NCQ3 95 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 DUX4Q9UBX2 424 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 YEATS2Q9ULM3 1422 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 CROCC2H7BZ55 1655 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 PTCH1Q13635 1447 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ZRANB2O95218 330 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 RCAN1P53805 252 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 MXD4Q14582 209 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 TBC1D1Q86TI0 1168 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 PARP9Q8IXQ6 854 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 KIAA2013Q8IYS2 634 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 GANCQ8TET4 914 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 FAF2Q96CS3 445 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 OTUB1Q96FW1 271 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 PDLIM2Q96JY6 352 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 PALD1Q9ULE6 856 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 GMNCA6NCL1 334 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 M0R2C6 588 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 TOM1O60784 492 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 WBP4O75554 376 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 KITP10721 976 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 BTDP43251 543 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 TRPC1P48995 793 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 SCNN1DP51172 638 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 TBC1D10BQ4KMP7 808 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ABHD8Q96I13 439 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 INPP5FQ9Y2H2 1132 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 NINQ8N4C6 2090 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 ASXL2Q76L83 1435 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 RASA4BC9J798 803 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 RASA4O43374 803 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 GPATCH4Q5T3I0 446 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 NSUN7Q8NE18 718 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 NOVA2Q9UNW9 492 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 CDC42BPGQ6DT37 1551 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 KRT14P02533 472 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 CARSP49589 748 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 EPHB1P54762 984 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 PTK2BQ14289 1009 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 BTBD6Q96KE9 485 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 hCG_2014768A0A024R1R8 64 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 KRT38O76015 456 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 CCNE1P24864 410 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 CIITAP33076 1130 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 IFNL3Q8IZI9 196 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 MOV10L1Q9BXT6 1211 aaKnown RBP7.81□□□□□ -1.16
SYNE1-208ENST00000367256 USP44Q9H0E7 712 aa7.81□□□□□ -1.16
SYNE1-208ENST00000367256 LMTK3Q96Q04 1460 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 DNAJC6O75061 913 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TJP3O95049 919 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 CD58P19256 250 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PPP2R2AP63151 447 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PKP1Q13835 747 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ZMYM1Q5SVZ6 1142 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 OSBPL1AQ9BXW6 950 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PITPNM3Q9BZ71 974 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TMEM206Q9H813 350 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SEL1LQ9UBV2 794 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 MAN1B1Q9UKM7 699 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 DIAPH2O60879 1101 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SKOR1P84550 965 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PTH1RQ03431 593 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SAYSD1Q9NPB0 183 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ARHGEF37A1IGU5 675 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 USP17L12C9JPN9 530 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 USP17L21D6R901 530 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 GGPS1O95749 300 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ZNF18P17022 549 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SMARCA1P28370 1054 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 KCTD2Q14681 263 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 LBRQ14739 615 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 LLGL1Q15334 1064 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 KIAA1755Q5JYT7 1200 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 NUGGCQ68CJ6 796 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ECT2Q9H8V3 914 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SH3GLB2Q9NR46 395 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TCP10L2B9ZVM9 353 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 HMGB3O15347 200 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 IMPG1Q17R60 797 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PLEKHM3Q6ZWE6 761 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TTC30BQ8N4P2 665 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SCG3Q8WXD2 468 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 DONSONQ9NYP3 566 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SRPRBQ9Y5M8 271 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 AATKQ6ZMQ8 1374 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 PI4K2BG5E9Z4 385 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 ANP32DO95626 131 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 TTLL1O95922 423 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 MRPS15P82914 257 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 KIAA1841Q6NSI8 718 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 DDX17Q92841 729 aaKnown RBP7.8□□□□□ -1.16
SYNE1-208ENST00000367256 OSBPL9Q96SU4 736 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 EDEM3Q9BZQ6 932 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 SLITRK6Q9H5Y7 841 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 LGALS16A8MUM7 142 aa7.8□□□□□ -1.16
SYNE1-208ENST00000367256 LIFRP42702 1097 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms