RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF277Q9NRM2 450 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 NDE1Q9NXR1 346 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 ZNF335Q9H4Z2 1342 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 MED14O60244 1454 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 ARHGEF40Q8TER5 1519 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 PP2D1A8MPX8 630 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 PPP1R2P3Q6NXS1 205 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 KMT5AQ9NQR1 393 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 TTC7AQ9ULT0 858 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 FHOD1Q9Y613 1164 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 NEXMIFQ5QGS0 1516 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 H2AFXP16104 143 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 TRMT10CQ7L0Y3 403 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 DGKHQ86XP1 1220 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 HNRNPLLQ8WVV9 542 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 MS4A14Q96JA4 679 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 FUT8Q9BYC5 575 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 APOBEC2Q9Y235 224 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 PTPRMP28827 1452 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 CLTCQ00610 1675 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 ARL4CP56559 192 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 TXNRD1Q16881 649 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 SPOPLQ6IQ16 392 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 RUBCNQ92622 972 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 MXD3Q9BW11 206 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 UPF3AQ9H1J1 476 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 IRAK4Q9NWZ3 460 aa20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-202ENST00000356786 TCP11X1B4DZS4 312 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 NR1I3Q14994 352 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 SLC17A8Q8NDX2 589 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 NRBF2Q96F24 287 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 CDC42BPGQ6DT37 1551 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 CAV1Q03135 178 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 SPATA21Q7Z572 469 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 KIAA0825Q8IV33 1275 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 TUBE1Q9UJT0 475 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 AXIN2Q9Y2T1 843 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 KRT10P13645 584 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 ITKQ08881 620 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 PFKFB3Q16875 520 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 SLC30A9Q6PML9 568 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 ARHGAP18Q8N392 663 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 GRAMD1AQ96CP6 724 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 USP21Q9UK80 565 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 MAGED2Q9UNF1 606 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 H7C1W4 665 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 RGS9BPQ6ZS82 235 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 FAM149B1Q96BN6 582 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 HOOK2Q96ED9 719 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 ARL2BPQ9Y2Y0 163 aa20.92■□□□□ 0.94
CCDC88B-202ENST00000356786 GOLGA8IPA6NC78 632 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 GOLGA8JA6NMD2 632 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 AP2B1P63010 937 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 DLGAP5Q15398 846 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 ZMAT2Q96NC0 199 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 SH3GLB2Q9NR46 395 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 ZBTB1Q9Y2K1 713 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 ATP10DQ9P241 1426 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 CDC37Q16543 378 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 TMEM259Q4ZIN3 620 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 CCDC137Q6PK04 289 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 TRIM59Q8IWR1 403 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 SUPT20HQ8NEM7 779 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 ADGRL3Q9HAR2 1447 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 TJP3O95049 919 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 GRAMD4Q6IC98 578 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 BRINP3Q76B58 766 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 GUF1Q8N442 669 aaKnown RBP20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 SEC16BQ96JE7 1060 aa20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 FBXO2Q9UK22 296 aaPredicted RBP20.91■□□□□ 0.94
CCDC88B-202ENST00000356786 NR3C1P04150 777 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 MCF2L2Q86YR7 1114 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 NACA2Q9H009 215 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 RFX8Q6ZV50 586 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 NLRP10Q86W26 655 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 STAMBPL1Q96FJ0 436 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 CCPG1Q9ULG6 757 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 HP1BP3Q5SSJ5 553 aaPredicted RBP20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 TMC4Q7Z404 712 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 PRMT1Q99873 361 aaKnown RBP20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 GOLGA8MH3BSY2 632 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 ABCB5Q2M3G0 1257 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 OR2W6PQ8NHA6 318 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 DEPDC1BQ8WUY9 529 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 NUB1Q9Y5A7 615 aa20.9■□□□□ 0.94
CCDC88B-202ENST00000356786 WDR64B1ANS9 1081 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 ZBED1O96006 694 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 PDXDC1Q6P996 788 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 SFR1Q86XK3 245 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 TTC25Q96NG3 672 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 OLFM3Q96PB7 478 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 ZIM3Q96PE6 472 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 ADPGKQ9BRR6 497 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 MED10Q9BTT4 135 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 HSPA4LO95757 839 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 KITP10721 976 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms