RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 LRRC55Q6ZSA7 311 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 HEATR3Q7Z4Q2 680 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 CEP57Q86XR8 500 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 SIAH1Q8IUQ4 282 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 LRRC47Q8N1G4 583 aaKnown RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 CCDC197Q8NCU1 140 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 GPKOWQ92917 476 aaPredicted RBP eCLIP17.28■□□□□ 0.363e-8■■■■□ 26
HMGA1-202ENST00000347617 GMCL1Q96IK5 515 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 CNTNAP1P78357 1384 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 ZSCAN5CA6NGD5 496 aaPredicted RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 FZD9O00144 591 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 ASAP2O43150 1006 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 DRD4P21917 467 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 ECHS1P30084 290 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 CLNS1AP54105 237 aaKnown RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 MARSP56192 900 aaKnown RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 NONOQ15233 471 aaKnown RBP eCLIP17.28■□□□□ 0.366e-7■□□□□ 10
HMGA1-202ENST00000347617 CLUL1Q15846 466 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 UAP1Q16222 522 aaPredicted RBP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 FAM83BQ5T0W9 1011 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 ANKRD13CQ8N6S4 541 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 SEC14L1Q92503 715 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 CHMP6Q96FZ7 201 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.28■□□□□ 0.36
HMGA1-202ENST00000347617 MYOZ2Q9NPC6 264 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 HAUS2Q9NVX0 235 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 BCS1LQ9Y276 419 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 COL4A3BPQ9Y5P4 624 aa17.28■□□□□ 0.36
HMGA1-202ENST00000347617 ARFGEF1Q9Y6D6 1849 aa17.27■□□□□ 0.36
HMGA1-202ENST00000347617 TCP10L2B9ZVM9 353 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 FTCDO95954 541 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 KLRC1P26715 233 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 TNNI2P48788 182 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 NAPAP54920 295 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 IRX1P78414 480 aaPredicted RBP17.27■□□□□ 0.35
HMGA1-202ENST00000347617 FKBP3Q00688 224 aaKnown RBP17.27■□□□□ 0.35
HMGA1-202ENST00000347617 LMNB2Q03252 620 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 ICA1Q05084 483 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 EHHADHQ08426 723 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 ASIC2Q16515 512 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 LRRC15Q8TF66 581 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 TLCD1Q96CP7 247 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 PIGSQ96S52 555 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.27■□□□□ 0.357e-12■■■■□ 22.2
HMGA1-202ENST00000347617 MOV10L1Q9BXT6 1211 aaKnown RBP17.27■□□□□ 0.35
HMGA1-202ENST00000347617 RAB34Q9BZG1 259 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 GLT8D2Q9H1C3 349 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 PGAP2Q9UHJ9 254 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 MTMR7Q9Y216 660 aa17.27■□□□□ 0.35
HMGA1-202ENST00000347617 SMCO2A6NFE2 343 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 CCT8L1PA6NM43 557 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 WNT10BO00744 389 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 EIF6P56537 245 aaKnown RBP17.26■□□□□ 0.35
HMGA1-202ENST00000347617 KCNMA1Q12791 1236 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 ZKSCAN8Q15776 578 aaPredicted RBP17.26■□□□□ 0.35
HMGA1-202ENST00000347617 KIAA0753Q2KHM9 967 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 PLIN2Q99541 437 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 FAM129AQ9BZQ8 928 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 UBA5Q9GZZ9 404 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 JMJD4Q9H9V9 463 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 SLC39A2Q9NP94 309 aa17.26■□□□□ 0.35
HMGA1-202ENST00000347617 DIS3Q9Y2L1 958 aaKnown RBP17.26■□□□□ 0.35
HMGA1-202ENST00000347617 TNFAIP1Q13829 316 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 BYSLQ13895 437 aaKnown RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 ERMARDQ5T6L9 678 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 SLFN13Q68D06 897 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 NEK8Q86SG6 692 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 FAM228AQ86W67 206 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 KLHL7Q8IXQ5 586 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 ADGRF4Q8IZF3 695 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 SYCE1Q8N0S2 351 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 RASGEF1CQ8N431 466 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 CUL5Q93034 780 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 SCLT1Q96NL6 688 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 XPO6Q96QU8 1125 aaKnown RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 TRIM6Q9C030 488 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 TANGO6Q9C0B7 1094 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 GINM1Q9NU53 330 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 PPP1R1BQ9UD71 204 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 FBXL5Q9UKA1 691 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 INTUQ9ULD6 942 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 A0A0A6YYK5 440 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 CLRN2A0PK11 232 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 CCDC189A1A4V9 331 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 KCNK3O14649 394 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 ZBTB5O15062 677 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 ATP6V1G2O95670 118 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 GBP2P32456 591 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 FXR2P51116 673 aaKnown RBP eCLIP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 NPEPPSP55786 919 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 ELF3P78545 371 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 KLHL30Q0D2K2 578 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 TMEM266Q2M3C6 531 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 TMC3Q7Z5M5 1100 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 UBLCP1Q8WVY7 318 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 TBC1D5Q92609 795 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 LARP4BQ92615 738 aaKnown RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 CDK5RAP3Q96JB5 506 aa17.25■□□□□ 0.35
HMGA1-202ENST00000347617 NSRP1Q9H0G5 558 aaKnown RBP17.25■□□□□ 0.35
HMGA1-202ENST00000347617 EBF2Q9HAK2 575 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms