RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 FAM83AQ86UY5 434 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 OLIG1Q8TAK6 271 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 FAM71BQ8TC56 605 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 ZBED3Q96IU2 234 aaPredicted RBP16.89■□□□□ 0.29
UPF3B-202ENST00000345865 DEFB129Q9H1M3 183 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 LUC7LQ9NQ29 371 aaKnown RBP16.89■□□□□ 0.29
UPF3B-202ENST00000345865 FBXL5Q9UKA1 691 aa16.89■□□□□ 0.29
UPF3B-202ENST00000345865 AGPSO00116 658 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 PSMC2P35998 433 aaKnown RBP16.88■□□□□ 0.29
UPF3B-202ENST00000345865 PAFAH1B1P43034 410 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 NFIL3Q16649 462 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 ODR4Q5SWX8 454 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 FAM178BQ8IXR5 827 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 MTMR14Q8NCE2 650 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 CLEC4DQ8WXI8 215 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 TEKT3Q9BXF9 490 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 ZNF341Q9BYN7 854 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 DMAC2Q9NW81 257 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 CCPG1Q9ULG6 757 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 GTPBP10A4D1E9 387 aaKnown RBP16.88■□□□□ 0.29
UPF3B-202ENST00000345865 PHF20L1A8MW92 1017 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 ICAM1P05362 532 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 SETQ01105 290 aaPredicted RBP16.88■□□□□ 0.29
UPF3B-202ENST00000345865 CXCL9Q07325 125 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 CBWD6Q4V339 395 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 CBWD3Q5JTY5 395 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 CBWD5Q5RIA9 395 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 ALKBH5Q6P6C2 394 aaKnown RBP16.88■□□□□ 0.29
UPF3B-202ENST00000345865 STRA6Q9BX79 667 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 AGPAT3Q9NRZ7 376 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 KCNH7Q9NS40 1196 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 TSKSQ9UJT2 592 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 ZNRF3Q9ULT6 936 aa16.88■□□□□ 0.29
UPF3B-202ENST00000345865 DHX15O43143 795 aaKnown RBP16.87■□□□□ 0.29
UPF3B-202ENST00000345865 ASNSP08243 561 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 MUTP22033 750 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 CYP2J2P51589 502 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 FER1L6Q2WGJ9 1857 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 CFAP221Q4G0U5 840 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 INPP4AQ96PE3 977 aaPredicted RBP16.87■□□□□ 0.29
UPF3B-202ENST00000345865 EHMT1Q9H9B1 1298 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 MED4Q9NPJ6 270 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 PSD3Q9NYI0 1048 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 SEL1LQ9UBV2 794 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 BZW2Q9Y6E2 419 aaKnown RBP16.87■□□□□ 0.29
UPF3B-202ENST00000345865 RPTORQ8N122 1335 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 BTNL10A8MVZ5 291 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 DDX3XO00571 662 aaKnown RBP eCLIP16.87■□□□□ 0.292e-9■■■□□ 14.7
UPF3B-202ENST00000345865 HIP1RO75146 1068 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 PPP1R37O75864 691 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 EGFRP00533 1210 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 TRIM49P0CI25 452 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 TRIM49CP0CI26 452 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 GUCY2CP25092 1073 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 LMAN1P49257 510 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 RNASE9P60153 205 aaKnown RBP16.87■□□□□ 0.29
UPF3B-202ENST00000345865 MAEAQ7L5Y9 396 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 AGBL3Q8NEM8 1001 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 STIM2Q9P246 746 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 ODF2LQ9ULJ1 636 aa16.87■□□□□ 0.29
UPF3B-202ENST00000345865 SRCAPQ6ZRS2 3230 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 GFPT2O94808 682 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 GGCXP38435 758 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 FMO5P49326 533 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 ITGB3BPQ13352 177 aaPredicted RBP16.86■□□□□ 0.29
UPF3B-202ENST00000345865 PLS1Q14651 629 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 PTPROQ16827 1216 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 HSP90B2PQ58FF3 399 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 CCDC70Q6NSX1 233 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 LRRC57Q8N9N7 239 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 HOOK2Q96ED9 719 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 RIT2Q99578 217 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 PLEKHA4Q9H4M7 779 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 ZSCAN5CA6NGD5 496 aaPredicted RBP16.86■□□□□ 0.29
UPF3B-202ENST00000345865 RNF40O75150 1001 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 GLI1P08151 1106 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 HNRNPH2P55795 449 aaKnown RBP16.86■□□□□ 0.29
UPF3B-202ENST00000345865 MRPS9P82933 396 aaKnown RBP16.86■□□□□ 0.29
UPF3B-202ENST00000345865 C10orf76Q5T2E6 689 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 CPXCR1Q8N123 301 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 MKNK1Q9BUB5 465 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 GPR88Q9GZN0 384 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 ACBD3Q9H3P7 528 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 KCND2Q9NZV8 630 aa16.86■□□□□ 0.29
UPF3B-202ENST00000345865 ARHGEF35A5YM69 484 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 TISP43B9A030 160 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 EVI5O60447 810 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 SPP2Q13103 211 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 RASA3Q14644 834 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 MUM1L1Q5H9M0 696 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 C8orf74Q6P047 294 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 PADI6Q6TGC4 694 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 SND1Q7KZF4 910 aaKnown RBP eCLIP16.85■□□□□ 0.29
UPF3B-202ENST00000345865 LNX1Q8TBB1 728 aaPredicted RBP16.85■□□□□ 0.29
UPF3B-202ENST00000345865 SH2D3AQ9BRG2 576 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 RNF14Q9UBS8 474 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 ZBTB48P10074 688 aaPredicted RBP16.85■□□□□ 0.29
UPF3B-202ENST00000345865 BCRP11274 1271 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 HS2ST1Q7LGA3 356 aa16.85■□□□□ 0.29
UPF3B-202ENST00000345865 MIER3Q7Z3K6 550 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms