RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HOMER2Q9NSB8 354 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 ZNRF3Q9ULT6 936 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 PLA2G6O60733 806 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 PTGER2P43116 358 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 RNASE9P60153 205 aaKnown RBP21.17■□□□□ 0.98
COL9A3-201ENST00000343916 SETQ01105 290 aaPredicted RBP21.17■□□□□ 0.98
COL9A3-201ENST00000343916 PTPROQ16827 1216 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 CCDC70Q6NSX1 233 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 B3GNT9Q6UX72 402 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 FAM83AQ86UY5 434 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 NIM1KQ8IY84 436 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 KCTD17Q8N5Z5 321 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 HOOK2Q96ED9 719 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 PLEKHA4Q9H4M7 779 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 KCNH7Q9NS40 1196 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 HPCAL4Q9UM19 191 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 PCDHGC5Q9Y5F6 944 aa21.17■□□□□ 0.98
COL9A3-201ENST00000343916 GRID2IPA4D2P6 1211 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 CAPN2P17655 700 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 PSMC2P35998 433 aaKnown RBP21.16■□□□□ 0.98
COL9A3-201ENST00000343916 ITIH3Q06033 890 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 HSP90B2PQ58FF3 399 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 FKBP1CQ5VVH2 108 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 TRMT1LQ7Z2T5 733 aaKnown RBP21.16■□□□□ 0.98
COL9A3-201ENST00000343916 SH2D3AQ9BRG2 576 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 KIF13BQ9NQT8 1826 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 ICAM1P05362 532 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 ZNF131P52739 623 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 RIN2Q8WYP3 895 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-201ENST00000343916 NAGPAQ9UK23 515 aa21.16■□□□□ 0.98
COL9A3-201ENST00000343916 FAM170AA1A519 330 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 HIP1RO75146 1068 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 EGFRP00533 1210 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 HSD17B4P51659 736 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 ALKBH5Q6P6C2 394 aaKnown RBP21.15■□□□□ 0.98
COL9A3-201ENST00000343916 RDH13Q8NBN7 331 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 ARHGEF35A5YM69 484 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 TULP2O00295 520 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 TRIM49P0CI25 452 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 TRIM49CP0CI26 452 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 LMAN1P49257 510 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 JAM2P57087 298 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 MEI1Q5TIA1 1274 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 DAW1Q8N136 415 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 AGBL3Q8NEM8 1001 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 AGPAT3Q9NRZ7 376 aa21.15■□□□□ 0.98
COL9A3-201ENST00000343916 RASA3Q14644 834 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 CFAP221Q4G0U5 840 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 CBWD6Q4V339 395 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 CBWD3Q5JTY5 395 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 CBWD5Q5RIA9 395 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 HS2ST1Q7LGA3 356 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 CLEC4DQ8WXI8 215 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 TSKSQ9UJT2 592 aa21.14■□□□□ 0.98
COL9A3-201ENST00000343916 MYH11P35749 1972 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 ZC3H4Q9UPT8 1303 aaKnown RBP21.14■□□□□ 0.97
COL9A3-201ENST00000343916 GFPT2O94808 682 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 SYF2O95926 243 aaKnown RBP21.14■□□□□ 0.97
COL9A3-201ENST00000343916 ALAS1P13196 640 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 MAPK7Q13164 816 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 TEX2Q8IWB9 1127 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 MTMR14Q8NCE2 650 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 BBXQ8WY36 941 aaPredicted RBP21.14■□□□□ 0.97
COL9A3-201ENST00000343916 VIPAS39Q9H9C1 493 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 RAVER2Q9HCJ3 691 aaKnown RBP21.14■□□□□ 0.97
COL9A3-201ENST00000343916 ODF2LQ9ULJ1 636 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 SAMM50Q9Y512 469 aa21.14■□□□□ 0.97
COL9A3-201ENST00000343916 BZW2Q9Y6E2 419 aaKnown RBP21.14■□□□□ 0.97
COL9A3-201ENST00000343916 PHF20L1A8MW92 1017 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 PPP1R12BO60237 982 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-201ENST00000343916 FMO5P49326 533 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 MIER3Q7Z3K6 550 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 FAM71BQ8TC56 605 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 AENQ8WTP8 325 aaKnown RBP21.13■□□□□ 0.97
COL9A3-201ENST00000343916 ACBD3Q9H3P7 528 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 MYOZ2Q9NPC6 264 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 SEL1LQ9UBV2 794 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 TISP43B9A030 160 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 PRKCIP41743 596 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 NOP2P46087 812 aaKnown RBP21.13■□□□□ 0.97
COL9A3-201ENST00000343916 MUM1L1Q5H9M0 696 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 C8orf74Q6P047 294 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 PADI6Q6TGC4 694 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 EXOC4Q96A65 974 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 ZBED3Q96IU2 234 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-201ENST00000343916 RIT2Q99578 217 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 FBXL5Q9UKA1 691 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 BCS1LQ9Y276 419 aa21.13■□□□□ 0.97
COL9A3-201ENST00000343916 ITGB3BPQ13352 177 aaPredicted RBP21.12■□□□□ 0.97
COL9A3-201ENST00000343916 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.12■□□□□ 0.97
COL9A3-201ENST00000343916 SYCP3Q8IZU3 236 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 PRPF38AQ8NAV1 312 aaKnown RBP21.12■□□□□ 0.97
COL9A3-201ENST00000343916 STIM2Q9P246 746 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 FRMD4BQ9Y2L6 1034 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 GTPBP10A4D1E9 387 aaKnown RBP21.12■□□□□ 0.97
COL9A3-201ENST00000343916 TMEM150BA6NC51 233 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 DHX15O43143 795 aaKnown RBP21.12■□□□□ 0.97
COL9A3-201ENST00000343916 MUTP22033 750 aa21.12■□□□□ 0.97
COL9A3-201ENST00000343916 MRPS9P82933 396 aaKnown RBP21.12■□□□□ 0.97
COL9A3-201ENST00000343916 ZSCAN26Q16670 478 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms