RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 IYDQ6PHW0 289 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ITPKCQ96DU7 683 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 GGCXP38435 758 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MRPL28Q13084 256 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MAP3K21Q5TCX8 1036 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TAOK1Q7L7X3 1001 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SPICE1Q8N0Z3 855 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SENP1Q9P0U3 644 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 A2MP01023 1474 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC195A0A1B0GUA6 201 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CLASP2O75122 1294 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CAV1Q03135 178 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 BLOC1S2Q6QNY1 142 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 RSRC2Q7L4I2 434 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CRACR2BQ8N4Y2 399 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PPP1R14CQ8TAE6 165 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 EPN3Q9H201 632 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 EPB41L5Q9HCM4 733 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MAP3K2Q9Y2U5 619 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 COL4A3BPQ9Y5P4 624 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SNX14Q9Y5W7 946 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 B4DLN1 442 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 XPO1O14980 1071 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 XRCC4Q13426 336 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ANKRD20A8PQ5CZ79 823 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PRRG3Q9BZD7 231 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CCDC189A1A4V9 331 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ZCCHC18P0CG32 403 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PRKCIP41743 596 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 VWA3BQ502W6 1294 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 C16orf46Q6P387 395 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SPC25Q9HBM1 224 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SNX24Q9Y343 169 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ASAP2O43150 1006 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PDE4BQ07343 736 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PDCLQ13371 301 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ARHGEF2Q92974 986 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 UNC45AQ9H3U1 944 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PLEKHA5Q9HAU0 1116 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CNGB3Q9NQW8 809 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ITM2CQ9NQX7 267 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MLH3Q9UHC1 1453 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PTPRFP10586 1907 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SNCBQ16143 134 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SDE2Q6IQ49 451 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CYP26C1Q6V0L0 522 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF572Q7Z3I7 529 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ALKBH8Q96BT7 664 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 VPS51Q9UID3 782 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SAR1BQ9Y6B6 198 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TICRRQ7Z2Z1 1910 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PI4K2BG5E9Z4 385 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 FIGNQ5HY92 759 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ZNF449Q6P9G9 518 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ARMT1Q9H993 441 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TRPV5Q9NQA5 729 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 GIN1Q9NXP7 522 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 GOLGA6AQ9NYA3 693 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SH3BP1Q9Y3L3 701 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 KIF26AQ9ULI4 1882 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PNMA6EA0A0J9YXQ4 647 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SERPINB4P48594 390 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 NKX2-3Q8TAU0 364 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 C19orf44Q9H6X5 657 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TEKT2Q9UIF3 430 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 NEDD4P46934 1319 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CASP8AP2Q9UKL3 1982 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ARFGEF2Q9Y6D5 1785 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MGEA5O60502 916 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PHKA2P46019 1235 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 NME5P56597 212 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 NT5DC1Q5TFE4 455 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PALB2Q86YC2 1186 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 IL1RL2Q9HB29 575 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MROH7-TTC4A0A0A0MT08 1334 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ATAD3BQ5T9A4 648 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 FERMT2Q96AC1 680 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 PTPN22Q9Y2R2 807 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 RREB1Q92766 1687 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 IQCA1LA6NCM1 817 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 LAD1O00515 517 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SCAMP3O14828 347 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ECEL1O95672 775 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 VARSP26640 1264 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CALCOCO2Q13137 446 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CYP4F22Q6NT55 531 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 ANO5Q75V66 913 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 POLR3CQ9BUI4 534 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 MRPL46Q9H2W6 279 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 E2F6O75461 281 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TATP17735 454 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CYLC1P35663 651 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TUFMP49411 452 aaKnown RBP3.81□□□□□ -1.8
SYNE1-201ENST00000341594 KRT26Q7Z3Y9 468 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TRPC4APQ8TEL6 797 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 CHP1Q99653 195 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 SIKE1Q9BRV8 207 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 FUT8Q9BYC5 575 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 TNKSO95271 1327 aa3.81□□□□□ -1.8
SYNE1-201ENST00000341594 C4AP0C0L4 1744 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms