RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 STK4Q13043 487 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 STILQ15468 1287 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 PLEKHH3Q7Z736 793 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 LRRC8AQ8IWT6 810 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 THNSL1Q8IYQ7 743 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 GRAMD1CQ8IYS0 662 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 NLRP4Q96MN2 994 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 UIMC1Q96RL1 719 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 GMLQ99445 158 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 RPF1Q9H9Y2 349 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 VTA1Q9NP79 307 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ANKFY1Q9P2R3 1169 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 SSU72P8A0A1W2PR75 194 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ANO9A1A5B4 782 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 EIF3DO15371 548 aaKnown RBP eCLIP7.45□□□□□ -1.223e-7■□□□□ 8.4
SF3B1-201ENST00000335508 CYTH3O43739 400 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 IQCB1Q15051 598 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 TYW1BQ6NUM6 668 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 LEKR1Q6ZMV7 388 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 REM2Q8IYK8 340 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 PRKAG2Q9UGJ0 569 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 GON4LQ3T8J9 2241 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 IGSF9BQ9UPX0 1349 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 PLIN4Q96Q06 1357 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 SLC16A3O15427 465 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 THAP12O43422 761 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CUL4BQ13620 913 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 DUOXA2Q1HG44 320 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 TAF2Q6P1X5 1199 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 FOXR2Q6PJQ5 311 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 RNF169Q8NCN4 708 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 RGL1Q9NZL6 768 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 SPDYE4A6NLX3 237 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 NFKBIEO00221 500 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 MSH4O15457 936 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 FIGNQ5HY92 759 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 C8orf74Q6P047 294 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 ELMSAN1Q6PJG2 1045 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 GOLGA6L7A0A1B0GV03 622 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CCDC66A2RUB6 948 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 DYNC1LI2O43237 492 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 C6orf222P0C671 652 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PPFIA1Q13136 1202 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PRAMEF18Q5VWM3 479 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CENPPQ6IPU0 288 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 LBX2Q6XYB7 198 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 SYT2Q8N9I0 419 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 U2AF1L4Q8WU68 220 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 A1CFQ9NQ94 594 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 LIMA1Q9UHB6 759 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 KCNH2Q12809 1159 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CCDC14Q49A88 953 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 TCP11X2Q5H9J9 407 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 TRIM72Q6ZMU5 477 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PIAS4Q8N2W9 510 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 ZNF560Q96MR9 790 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 INPP4AQ96PE3 977 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 MTRQ99707 1265 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 ADAMTS1Q9UHI8 967 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 AGTPBP1Q9UPW5 1226 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PPP2R2CQ9Y2T4 447 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 ZMYM2Q9UBW7 1377 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 MED7O43513 233 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PRCPP42785 496 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CHADLQ6NUI6 762 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 SMYD4Q8IYR2 804 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PCSK9Q8NBP7 692 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 SPIRE2Q8WWL2 714 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 HAUS1Q96CS2 278 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CENPHQ9H3R5 247 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 GCNT4Q9P109 453 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 PP2D1A8MPX8 630 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CEP104O60308 925 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 ECM2O94769 699 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 GUCY2CP25092 1073 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 YWHABP31946 246 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 ADKP55263 362 aaKnown RBP7.44□□□□□ -1.22
SF3B1-201ENST00000335508 FUT2Q10981 343 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 GNASQ5JWF2 1037 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 RAET1EQ8TD07 263 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 NLRP7Q8WX94 980 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 CEP72Q9P209 647 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 SCINQ9Y6U3 715 aa7.44□□□□□ -1.22
SF3B1-201ENST00000335508 OPA1O60313 960 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 MFAP3LO75121 409 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 MAN1A1P33908 653 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ZNF484Q5JVG2 852 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 PCNX4Q63HM2 1172 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 CDC23Q9UJX2 597 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 GOLGA4Q13439 2230 aaKnown RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 CACNA1FO60840 1977 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 FZD9O00144 591 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 TOM1L1O75674 476 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 LMNB2Q03252 620 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ZNF568Q3ZCX4 644 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 TWF2Q6IBS0 349 aaKnown RBP7.43□□□□□ -1.22
SF3B1-201ENST00000335508 ANKRD23Q86SG2 305 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 CD302Q8IX05 232 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 C7orf43Q8WVR3 580 aa7.43□□□□□ -1.22
SF3B1-201ENST00000335508 HOMER3Q9NSC5 361 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms