RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TBC1D14Q9P2M4 693 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 VTI1BQ9UEU0 232 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 MYO1GB0I1T2 1018 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 GMFGO60234 142 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 TUBBP07437 444 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 RAB4AP20338 218 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SPOPLQ6IQ16 392 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 AACSQ86V21 672 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 PNPT1Q8TCS8 783 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ASB12Q8WXK4 309 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 KCNB2Q92953 911 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 BBS4Q96RK4 519 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 VPS51Q9UID3 782 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ELP1O95163 1332 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 HMOX1P09601 288 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 CALM1P0DP23 149 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 CALM2P0DP24 149 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 CALM3P0DP25 149 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 NFIXQ14938 502 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 UVSSAQ2YD98 709 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 VWA3BQ502W6 1294 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ATAD3CQ5T2N8 411 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SCYL2Q6P3W7 929 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SSH1Q8WYL5 1049 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 HDAC2Q92769 488 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 MSANTD3Q96H12 275 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 DGCR6LQ9BY27 220 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ATXN10Q9UBB4 475 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 XPO7Q9UIA9 1087 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 TMCC3Q9ULS5 477 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 BCAR3O75815 825 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 RASGRP1O95267 797 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 KRT19P08727 400 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 RGS7P49802 495 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 PPP2CAP67775 309 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SP4Q02446 784 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 KANK3Q6NY19 840 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 MICU3Q86XE3 530 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF507Q8TCN5 953 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 SEPT1Q8WYJ6 367 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 CARD14Q9BXL6 1004 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 INTS9Q9NV88 658 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 AURKCQ9UQB9 309 aa8.14□□□□□ -1.11
LIMCH1-201ENST00000313860 GRID2IPA4D2P6 1211 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 KITP10721 976 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 GTF2H1P32780 548 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 SYKP43405 635 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 PLCD1P51178 756 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ARHGDIBP52566 201 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 RPP38P78345 283 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 TMED2Q15363 201 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 MAPK11Q15759 364 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 PRR23BQ6ZRT6 265 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 EPM2AIP1Q7L775 607 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 THRSPQ92748 146 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 RBM42Q9BTD8 480 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 EPN3Q9H201 632 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 MROH8Q9H579 483 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ADA2Q9NZK5 511 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 PKD2L2Q9NZM6 624 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 GNG13Q9P2W3 67 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF891A8MT65 544 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 AIPO00170 330 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 RAPGEF3O95398 923 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 LRMPQ12912 555 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 SPARCL1Q14515 664 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 SPANXN2Q5MJ10 180 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 RARS2Q5T160 578 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 NAIF1Q69YI7 327 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 TTC30AQ86WT1 665 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 DZIP3Q86Y13 1208 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 CLMNQ96JQ2 1002 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ZBTB18Q99592 522 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 TEX13BQ9BXU2 312 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 SELENONQ9NZV5 590 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 NOD1Q9Y239 953 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 PRXQ9BXM0 1461 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 KANK1Q14678 1352 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 KDM5BQ9UGL1 1544 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM66O15016 1216 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF202O95125 648 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 CIITAP33076 1130 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 KLHL35Q6PF15 583 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 PACS2Q86VP3 889 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ASPSCR1Q9BZE9 553 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 BSDC1Q9NW68 430 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 DHX34Q14147 1143 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 TOR1AIP1Q5JTV8 583 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM81BQ96LP2 452 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 SERHL2Q9H4I8 314 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 SERHLQ9NQF3 203 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 DDX56Q9NY93 547 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ZNF224Q9NZL3 707 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 IFNKQ9P0W0 207 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 STOML1Q9UBI4 398 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 ZMAT5Q9UDW3 170 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 EXOC7Q9UPT5 735 aa8.13□□□□□ -1.11
LIMCH1-201ENST00000313860 FAM92AA1XBS5 289 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 PIK3CDO00329 1044 aa8.12□□□□□ -1.11
LIMCH1-201ENST00000313860 TRIM24O15164 1050 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms