RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 IRAK1P51617 712 aa13.77□□□□□ -0.2
COL3A1-201ENST00000304636 RAD23BP54727 409 aa13.77□□□□□ -0.2
COL3A1-201ENST00000304636 FAM160B1Q5W0V3 765 aa13.77□□□□□ -0.2
COL3A1-201ENST00000304636 SFR1Q86XK3 245 aa13.77□□□□□ -0.2
COL3A1-201ENST00000304636 CXorf56Q9H5V9 222 aa13.77□□□□□ -0.2
COL3A1-201ENST00000304636 LOC102724159A0A0B4J2E5 919 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 APOEP02649 317 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 GLI2P10070 1586 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 BMP3P12645 472 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 CA8P35219 290 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 PWP2Q15269 919 aaKnown RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 KNOP1Q1ED39 458 aaKnown RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 SYDE2Q5VT97 1194 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 KIAA0825Q8IV33 1275 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 ELOA2Q8IYF1 753 aaPredicted RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 CXorf38Q8TB03 319 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 OSBPL1AQ9BXW6 950 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 WNT8AQ9H1J5 351 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 PLA2G4AP47712 749 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 RAB44Q7Z6P3 723 aaPredicted RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 SH2D3CQ8N5H7 860 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 CCDC68Q9H2F9 335 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 XAB2Q9HCS7 855 aaKnown RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 PFASO15067 1338 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 ZNF211Q13398 564 aaPredicted RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 TFDP1Q14186 410 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 ANKRD40Q6AI12 368 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 CCDC137Q6PK04 289 aaKnown RBP13.77□□□□□ -0.21
COL3A1-201ENST00000304636 SLC7A3Q8WY07 619 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 RFFLQ8WZ73 363 aa13.77□□□□□ -0.21
COL3A1-201ENST00000304636 A2ML1A8K2U0 1454 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 SSU72P8A0A1W2PR75 194 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 AP2B1P63010 937 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 NAALADL2Q58DX5 795 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 LRRC43Q8N309 656 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 SNF8Q96H20 258 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 SH3GL3Q99963 347 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 APOBEC2Q9Y235 224 aaKnown RBP13.76□□□□□ -0.21
COL3A1-201ENST00000304636 RFX1P22670 979 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 CTTNQ14247 550 aaKnown RBP13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ERFEQ4G0M1 354 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 PPP1R18Q6NYC8 613 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 RSBN1LQ6PCB5 846 aaPredicted RBP13.76□□□□□ -0.21
COL3A1-201ENST00000304636 HACE1Q8IYU2 909 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ADSSL1Q8N142 457 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 TTC13Q8NBP0 860 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 CEP170P1Q96L14 293 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 NUDCD1Q96RS6 583 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 MLXIPLQ9NP71 852 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 BSDC1Q9NW68 430 aaPredicted RBP13.76□□□□□ -0.21
COL3A1-201ENST00000304636 AMACRQ9UHK6 382 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ARL2BPQ9Y2Y0 163 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 FHOD1Q9Y613 1164 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ELF1P32519 619 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 LSP1P33241 339 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 GRM4Q14833 912 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 AGBL2Q5U5Z8 902 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 C1orf146Q5VVC0 180 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ENGASEQ8NFI3 743 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 BARHL2Q9NY43 387 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ABCC3O15438 1527 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 PRPSAP2O60256 369 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 TNFAIP1Q13829 316 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 LRRC14Q15048 493 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 SPATA21Q7Z572 469 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 REXO1L1PQ8IX06 675 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 ZNF564Q8TBZ8 553 aaPredicted RBP13.76□□□□□ -0.21
COL3A1-201ENST00000304636 DYDC2Q96IM9 177 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 OLFM3Q96PB7 478 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 IVNS1ABPQ9Y6Y0 642 aa13.76□□□□□ -0.21
COL3A1-201ENST00000304636 KRT38O76015 456 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ARFIP2P53365 341 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 CFLARO15519 480 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ARL4AP40617 200 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 PLCB4Q15147 1175 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 FSCBQ5H9T9 825 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 SPICE1Q8N0Z3 855 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 RIN2Q8WYP3 895 aaPredicted RBP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 NRBF2Q96F24 287 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 TMEM47Q9BQJ4 181 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ANLNQ9NQW6 1124 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 PXDNLA1KZ92 1463 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 NRKQ7Z2Y5 1582 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ZNF609O15014 1411 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 E9PMD0 336 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 HNRNPCL1O60812 293 aaKnown RBP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 DOK7Q18PE1 504 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 MMGT1Q8N4V1 131 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 DNAAF3Q8N9W5 541 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 CCDC138Q96M89 665 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 DHX36Q9H2U1 1008 aaKnown RBP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 SUFUQ9UMX1 484 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 GJA3Q9Y6H8 435 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 CROCC2H7BZ55 1655 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 PP2D1A8MPX8 630 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 TCP10L2B9ZVM9 353 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ZBED1O96006 694 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ANXA13P27216 316 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 IFRD2Q12894 506 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms