RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 DNAJC7Q99615 494 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TIMMDC1Q9NPL8 285 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ANAPC5Q9UJX4 755 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CORO1CQ9ULV4 474 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 L1RE1Q9UN81 338 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SUGT1Q9Y2Z0 365 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 STK25O00506 426 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TBC1D12O60347 775 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 WBP4O75554 376 aaKnown RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RXRGP48443 463 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 MFAP3P55082 362 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PDE1BQ01064 536 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TBC1D9BQ66K14 1250 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PLA2G12BQ9BX93 195 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 GDPD2Q9HCC8 539 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 CYP26B1Q9NR63 512 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PYCARDQ9ULZ3 195 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 KIF20BQ96Q89 1820 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TBKBP1A7MCY6 615 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 MAP2K7O14733 419 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 LSM1O15116 133 aaKnown RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 CALB1P05937 261 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 VHLP40337 213 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 LIG3P49916 1009 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TSTA3Q13630 321 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 HIF1AQ16665 826 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 MINDY2Q8NBR6 621 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 AGXT2Q9BYV1 514 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TRIM45Q9H8W5 580 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 GINM1Q9NU53 330 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SLC8A2Q9UPR5 921 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PCDHA5Q9Y5H7 936 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 POLR2DO15514 142 aaKnown RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 BASP1P80723 227 aaKnown RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 ROR2Q01974 943 aaKnown RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TFDP2Q14188 446 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 AASDHQ4L235 1098 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 NAALADL2Q58DX5 795 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 FRMD5Q7Z6J6 570 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RILPQ96NA2 401 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SLC7A5P2Q9GIP4 190 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TRPV6Q9H1D0 765 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PRKAG2Q9UGJ0 569 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 USP15Q9Y4E8 981 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SAC3D1A6NKF1 404 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SLCO1B7G3V0H7 640 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 POLR2EP19388 210 aaKnown RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RAP1GAPP47736 663 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 DEFA1P59665 94 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 DEFA3P59666 94 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 DNAJC3Q13217 504 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RSBN1LQ6PCB5 846 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SPATA5Q8NB90 893 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RFFLQ8WZ73 363 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PHF21AQ96BD5 680 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RAB20Q9NX57 234 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 MYO3BQ8WXR4 1341 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 ACTN3Q08043 901 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SNX1Q13596 522 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 APOA5Q6Q788 366 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 NBPF15Q8N660 670 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 DAGLBQ8NCG7 672 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 CTNND2Q9UQB3 1225 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 MEGF6O75095 1541 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 SNTNA6NMZ2 147 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 OPHN1O60890 802 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 TCF3P15923 654 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 ARHGDIAP52565 204 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 DR1Q01658 176 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PRKCQQ04759 706 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PTK2BQ14289 1009 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RINT1Q6NUQ1 792 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 XRRA1Q6P2D8 792 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 NUDCD3Q8IVD9 361 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PARP3Q9Y6F1 533 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 PDE8AO60658 829 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 IFT88Q13099 833 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 FLOT2Q14254 428 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 CCNI2Q6ZMN8 369 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-201ENST00000303395 ATP11CQ8NB49 1132 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 GIPC2Q8TF65 315 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 MAGEE1Q9HCI5 957 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 CD209Q9NNX6 404 aa5.6□□□□□ -1.51
SCN1A-201ENST00000303395 RNMTO43148 476 aaKnown RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 APOA1P02647 267 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 NUP62P37198 522 aaPredicted RBP5.59□□□□□ -1.51
SCN1A-201ENST00000303395 CDK18Q07002 472 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 UGP2Q16851 508 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 TCP11X2Q5H9J9 407 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 MS4A14Q96JA4 679 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 FUCA2Q9BTY2 467 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC88CQ9P219 2028 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 LRRC10BA6NIK2 292 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 CCT8L1PA6NM43 557 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 GPAA1O43292 621 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 MTSS1O43312 755 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 ZC3H11AO75152 810 aaKnown RBP eCLIP5.59□□□□□ -1.512e-6■□□□□ 9.4
SCN1A-201ENST00000303395 RPS6KA3P51812 740 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 PARP6Q2NL67 630 aa5.59□□□□□ -1.51
SCN1A-201ENST00000303395 MMEL1Q495T6 779 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms