RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 IFT43Q96FT9 208 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 TRIM54Q9BYV2 358 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 WDR11Q9BZH6 1224 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 SAYSD1Q9NPB0 183 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 UBE2TQ9NPD8 197 aaPredicted RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 TMED10P49755 219 aaKnown RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 GUCY1A3Q02108 690 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 CERKLQ49MI3 558 aaPredicted RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 CENPPQ6IPU0 288 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 RHOT2Q8IXI1 618 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 TTC17Q96AE7 1141 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 TADA1Q96BN2 335 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 PLEKHA8Q96JA3 519 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 PANX2Q96RD6 677 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 NEMP1O14524 444 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 MTHFSDQ2M296 383 aaKnown RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 FAM47AQ5JRC9 791 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 FANCBQ8NB91 859 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 PCDHGB4Q9UN71 923 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 TSC22D4Q9Y3Q8 395 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 MAST1Q9Y2H9 1570 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF18P17022 549 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 PTGDRQ13258 359 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 GCKRQ14397 625 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 E2F4Q16254 413 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 CCNYL1Q8N7R7 359 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 FAM133AQ8N9E0 248 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 P2RX5Q93086 422 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF556Q9HAH1 456 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 KLRF2D3W0D1 207 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 PODXLO00592 558 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 ZMYND10O75800 440 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 FGGP02679 453 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 CASS4Q9NQ75 786 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 UGGT2Q9NYU1 1516 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 hCG_2014768A0A024R1R8 64 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 ANGPT2O15123 496 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 PRPF4O43172 522 aaKnown RBP eCLIP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 CEP95Q96GE4 821 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 TGS1Q96RS0 853 aaKnown RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 AMNQ9BXJ7 453 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 GID8Q9NWU2 228 aa9.31□□□□□ -0.92
NIPBL-201ENST00000282516 GEMIN8Q9NWZ8 242 aaKnown RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 NOVA2Q9UNW9 492 aaKnown RBP9.31□□□□□ -0.92
NIPBL-201ENST00000282516 USP14P54578 494 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF827Q17R98 1081 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ABCB5Q2M3G0 1257 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 LRRC8EQ6NSJ5 796 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 TNIP2Q8NFZ5 429 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 EGFL8Q99944 293 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 THAP9Q9H5L6 903 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 NSMCE4AQ9NXX6 385 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 PCDHA7Q9UN72 937 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 FAM32AQ9Y421 112 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ABCA10Q8WWZ4 1543 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 KIF23Q02241 960 aaPredicted RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 HSPH1Q92598 858 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 CNBD2Q96M20 576 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ZNF577Q9BSK1 485 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 KLHL31Q9H511 634 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ZWILCHQ9H900 591 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 PAPOLBQ9NRJ5 636 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 KLHL8Q9P2G9 620 aaPredicted RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ATP5JP18859 108 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 VCPP55072 806 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 TBL3Q12788 808 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 CDR2LQ86X02 465 aaPredicted RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 GCC2Q8IWJ2 1684 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 GSPT1P15170 499 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 NUP62P37198 522 aaPredicted RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 FKBP3Q00688 224 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 GPATCH4Q5T3I0 446 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 CARMIL3Q8ND23 1372 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 CCDC188H7C350 402 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 MKRN3Q13064 507 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ANGPT1Q15389 498 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 EFHBQ8N7U6 833 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ST13P5Q8NFI4 369 aaPredicted RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 UHRF1BP1Q6BDS2 1440 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 IKBKBO14920 756 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ASAP2O43150 1006 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 TP53BP2Q13625 1128 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 MFN1Q8IWA4 741 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 TTC13Q8NBP0 860 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 SCFD1Q8WVM8 642 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 INPP5FQ9Y2H2 1132 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 KIF24Q5T7B8 1368 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 PI4K2BG5E9Z4 385 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 TAF5LO75529 589 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 KRR1Q13601 381 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 DCPSQ96C86 337 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 EIF4A3P38919 411 aaKnown RBP9.3□□□□□ -0.92
NIPBL-201ENST00000282516 CYP4A11Q02928 519 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ME3Q16798 604 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 LRRC31Q6UY01 552 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 ANKRD13CQ8N6S4 541 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 PCDHA13Q9Y5I0 950 aa9.3□□□□□ -0.92
NIPBL-201ENST00000282516 PSAPP07602 524 aa9.29□□□□□ -0.92
NIPBL-201ENST00000282516 KCNA2P16389 499 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms