RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 ATP6V0A4Q9HBG4 840 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 PLEKHG3A1L390 1219 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 ZBBXA8MT70 800 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 HIBCHQ6NVY1 386 aaPredicted RBP8.53□□□□□ -1.04
LIMD1-201ENST00000273317 ERVK-7P63135 1459 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 GTF2IP78347 998 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 PARD3BQ8TEW8 1205 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 ABCB6Q9NP58 842 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 NLRP1Q9C000 1473 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 KIF20BQ96Q89 1820 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 PFASO15067 1338 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 SLC26A4O43511 780 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 OSBPP22059 807 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 TNFAIP2Q03169 654 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 MYLK4Q86YV6 388 aaPredicted RBP8.53□□□□□ -1.04
LIMD1-201ENST00000273317 LRRC4Q9HBW1 653 aa8.53□□□□□ -1.04
LIMD1-201ENST00000273317 ZMYND10O75800 440 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 KRT8P05787 483 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 DYNLT1P63172 113 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 CYP4A11Q02928 519 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 AP3B2Q13367 1082 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 ITPRIPL1Q6GPH6 555 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 TRIM72Q6ZMU5 477 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 UNC13DQ70J99 1090 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 DNAJC10Q8IXB1 793 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 RYBPQ8N488 228 aaPredicted RBP8.52□□□□□ -1.04
LIMD1-201ENST00000273317 SAAL1Q96ER3 474 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 PAGR1Q9BTK6 254 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 TRIM62Q9BVG3 475 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 SLITRK6Q9H5Y7 841 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 SAYSD1Q9NPB0 183 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 EMILIN3Q9NT22 766 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 PDE8BO95263 885 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 A1BGP04217 495 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 TBXAS1P24557 533 aaPredicted RBP8.52□□□□□ -1.04
LIMD1-201ENST00000273317 SLC12A1Q13621 1099 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 FAM160B2Q86V87 743 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 RNF139Q8WU17 664 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 FAF2Q96CS3 445 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 TBK1Q9UHD2 729 aa8.52□□□□□ -1.04
LIMD1-201ENST00000273317 A0A0G2JND7 137 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 CFLARO15519 480 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 CTIFO43310 598 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TERF2Q15554 542 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TTC8Q8TAM2 541 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 SNF8Q96H20 258 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 OSBPL5Q9H0X9 879 aaPredicted RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 SATB2Q9UPW6 733 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 RASA4BC9J798 803 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 PPEF1O14829 653 aaPredicted RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 RASA4O43374 803 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 GYG1P46976 350 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 RESTQ13127 1097 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 PKP1Q13835 747 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 FAM47CQ5HY64 1035 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 MB21D1Q8N884 522 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 AP5M1Q9H0R1 490 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 RPF1Q9H9Y2 349 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 PLEKHG2Q9H7P9 1386 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TMEM2Q9UHN6 1383 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 CMTR1Q8N1G2 835 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 ANKRD13CQ8N6S4 541 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TBCKQ8TEA7 893 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 BAZ2BQ9UIF8 2168 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 RASSF10A6NK89 507 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 PIK3R2O00459 728 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 SNX2O60749 519 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TBC1D9BQ66K14 1250 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 PARP9Q8IXQ6 854 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TGS1Q96RS0 853 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 MSTO1Q9BUK6 570 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 ASNSD1Q9NWL6 643 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 HNRNPRO43390 633 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 LDHAP00338 332 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 RASSF3Q86WH2 238 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 CEP70Q8NHQ1 597 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 WNT8AQ9H1J5 351 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 E2F6O75461 281 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TAP1Q03518 808 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 ABI1Q8IZP0 508 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 HEXIM2Q96MH2 286 aaKnown RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 ADD2P35612 726 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 COPS2P61201 443 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TFDP2Q14188 446 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 TAB3Q8N5C8 712 aaPredicted RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 OTUB1Q96FW1 271 aaPredicted RBP8.52□□□□□ -1.05
LIMD1-201ENST00000273317 ABHD10Q9NUJ1 306 aa8.52□□□□□ -1.05
LIMD1-201ENST00000273317 SPATA31E1Q6ZUB1 1445 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 DISP1Q96F81 1524 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 FAM187AA6NFU0 413 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 HAUS5O94927 633 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 NPR1P16066 1061 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 FAM149B1Q96BN6 582 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 STAMBPL1Q96FJ0 436 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.51□□□□□ -1.057e-8■■■□□ 17
LIMD1-201ENST00000273317 NEUROG2Q9H2A3 272 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 EML4Q9HC35 981 aaKnown RBP8.51□□□□□ -1.05
LIMD1-201ENST00000273317 CHD1O14646 1710 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 PALMO75781 387 aa8.51□□□□□ -1.05
LIMD1-201ENST00000273317 CXCR5P32302 372 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms