RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 PLS3P13797 630 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 KRT83P78385 493 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 RBM10P98175 930 aaKnown RBP18.26■□□□□ 0.51
CCDC40-201ENST00000269318 CNTN2Q02246 1040 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 NAA30Q147X3 362 aaPredicted RBP18.26■□□□□ 0.51
CCDC40-201ENST00000269318 ANKRD35Q8N283 1001 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 SH2D3AQ9BRG2 576 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 CRACR2AQ9BSW2 395 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 MKNK1Q9BUB5 465 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 SPATC1LQ9H0A9 340 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 JPH1Q9HDC5 661 aaPredicted RBP18.26■□□□□ 0.51
CCDC40-201ENST00000269318 FBXO40Q9UH90 709 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 TELO2Q9Y4R8 837 aa18.26■□□□□ 0.51
CCDC40-201ENST00000269318 ZNF862O60290 1169 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 ALCAMQ13740 583 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 GNPTABQ3T906 1256 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 PLA2G4FQ68DD2 849 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 HS2ST1Q7LGA3 356 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 CACNA2D4Q7Z3S7 1137 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 SYN2Q92777 582 aaPredicted RBP18.25■□□□□ 0.51
CCDC40-201ENST00000269318 GANQ9H2C0 597 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 MYO1AQ9UBC5 1043 aa18.25■□□□□ 0.51
CCDC40-201ENST00000269318 K7ENM7 598 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 EIF3JO75822 258 aaKnown RBP18.24■□□□□ 0.51
CCDC40-201ENST00000269318 CNMDO75829 334 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 ICAM3P32942 547 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 PSMC2P35998 433 aaKnown RBP18.24■□□□□ 0.51
CCDC40-201ENST00000269318 NPEPPSP55786 919 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 APBA1Q02410 837 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 FSTL1Q12841 308 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 PPIL2Q13356 520 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 MOGSQ13724 837 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 ZNF569Q5MCW4 686 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 SLC9A9Q8IVB4 645 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 LRRN4CLQ8ND94 238 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 GOLGA5Q8TBA6 731 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 DRC1Q96MC2 740 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 NUCKS1Q9H1E3 243 aaKnown RBP18.24■□□□□ 0.51
CCDC40-201ENST00000269318 ASCC2Q9H1I8 757 aaPredicted RBP18.24■□□□□ 0.51
CCDC40-201ENST00000269318 ST6GALNAC4Q9H4F1 302 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 HAUS4Q9H6D7 363 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 GABBR1Q9UBS5 961 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 SLC9A2Q9UBY0 812 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 AGTPBP1Q9UPW5 1226 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 ZNF263O14978 683 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 LCA5LO95447 670 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 IRX3P78415 501 aaPredicted RBP18.24■□□□□ 0.51
CCDC40-201ENST00000269318 STXBP2Q15833 593 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 XKR9Q5GH70 373 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 HGSNATQ68CP4 663 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 FAM186BQ8IYM0 893 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 TMEM174Q8WUU8 243 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 CCDC42Q96M95 316 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 CCDC43Q96MW1 224 aaKnown RBP18.24■□□□□ 0.51
CCDC40-201ENST00000269318 PLCB1Q9NQ66 1216 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 GPRC5CQ9NQ84 441 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 TRIM10Q9UDY6 481 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 MRFAP1Q9Y605 127 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 WDR81Q562E7 1941 aa18.24■□□□□ 0.51
CCDC40-201ENST00000269318 GLTPD2A6NH11 291 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 PSAPP07602 524 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 ALDH5A1P51649 535 aaPredicted RBP18.23■□□□□ 0.51
CCDC40-201ENST00000269318 ACTR2P61160 394 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 POLR2FP61218 127 aaKnown RBP18.23■□□□□ 0.51
CCDC40-201ENST00000269318 SP2Q02086 613 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 MYBPC2Q14324 1141 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 DCAF17Q5H9S7 520 aaPredicted RBP18.23■□□□□ 0.51
CCDC40-201ENST00000269318 ABHD15Q6UXT9 468 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 SLC35F6Q8N357 371 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 ATP6V0A1Q93050 837 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 NLRC4Q9NPP4 1024 aa18.23■□□□□ 0.51
CCDC40-201ENST00000269318 ZC3H4Q9UPT8 1303 aaKnown RBP18.23■□□□□ 0.51
CCDC40-201ENST00000269318 RCCD1A6NED2 376 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 TLR2O60603 784 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 EDNRBP24530 442 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 EIF4A3P38919 411 aaKnown RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 NCKAP1LP55160 1127 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 GTF2BQ00403 316 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 MAPK8IP2Q13387 824 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 TTLL12Q14166 644 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 ASTE1Q2TB18 679 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 CCDC60Q8IWA6 550 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 TMEM206Q9H813 350 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 TFR2Q9UP52 801 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 DOCK5Q9H7D0 1870 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 GTPBP10A4D1E9 387 aaKnown RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 DKC1O60832 514 aaKnown RBP eCLIP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 SLC9A1P19634 815 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 PON1P27169 355 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 SWSAP1Q6NVH7 229 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 OPTNQ96CV9 577 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 LACRTQ9GZZ8 138 aa18.22■□□□□ 0.51
CCDC40-201ENST00000269318 TAF1DQ9H5J8 278 aaPredicted RBP18.22■□□□□ 0.51
CCDC40-201ENST00000269318 SSU72P8A0A1W2PR75 194 aa18.21■□□□□ 0.51
CCDC40-201ENST00000269318 SOWAHBA6NEL2 793 aa18.21■□□□□ 0.51
CCDC40-201ENST00000269318 IPO7O95373 1038 aaKnown RBP18.21■□□□□ 0.51
CCDC40-201ENST00000269318 CYP2J2P51589 502 aa18.21■□□□□ 0.51
CCDC40-201ENST00000269318 KIF11P52732 1056 aa18.21■□□□□ 0.51
CCDC40-201ENST00000269318 CYP27A1Q02318 531 aa18.21■□□□□ 0.51
CCDC40-201ENST00000269318 EXOC3L4Q17RC7 722 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms