RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 HPS3Q969F9 1004 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 GJA10Q969M2 543 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 PCMTD1Q96MG8 357 aaPredicted RBP20.26■□□□□ 0.83
CLN3-263ENST00000637871 NACC1Q96RE7 527 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 MXRA8Q9BRK3 442 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 TEKT3Q9BXF9 490 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 HAUS4Q9H6D7 363 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 ZNF215Q9UL58 517 aaPredicted RBP20.26■□□□□ 0.83
CLN3-263ENST00000637871 TRAF3IP3Q9Y228 551 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 CASP8AP2Q9UKL3 1982 aa20.26■□□□□ 0.83
CLN3-263ENST00000637871 CETN3O15182 167 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 GAS7O60861 476 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 NDUFA10O95299 355 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 LACTBP83111 547 aaPredicted RBP20.25■□□□□ 0.83
CLN3-263ENST00000637871 BMT2Q1RMZ1 405 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 MUM1L1Q5H9M0 696 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 RIOX2Q8IUF8 465 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 EHBP1Q8NDI1 1231 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 OLFML3Q9NRN5 406 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 RPTORQ8N122 1335 aa20.25■□□□□ 0.83
CLN3-263ENST00000637871 PDXKO00764 312 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 ATP2A1O14983 1001 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 CALUO43852 315 aaPredicted RBP20.24■□□□□ 0.83
CLN3-263ENST00000637871 TBCAO75347 108 aaKnown RBP20.24■□□□□ 0.83
CLN3-263ENST00000637871 URI1O94763 535 aaPredicted RBP20.24■□□□□ 0.83
CLN3-263ENST00000637871 RPL13P26373 211 aaKnown RBP20.24■□□□□ 0.83
CLN3-263ENST00000637871 STXBP4Q6ZWJ1 553 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 TXLNBQ8N3L3 684 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 KCTD10Q9H3F6 313 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 RNF146Q9NTX7 359 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 LBX1P52954 281 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 OAZ1P54368 228 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 MTF1Q14872 753 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 CCDC40Q4G0X9 1142 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 XRRA1Q6P2D8 792 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 ZNF710Q8N1W2 664 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 MNS1Q8NEH6 495 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 SCFD1Q8WVM8 642 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 TRERF1Q96PN7 1200 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 ZNF577Q9BSK1 485 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 DESI2Q9BSY9 194 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 SIK3Q9Y2K2 1263 aa20.24■□□□□ 0.83
CLN3-263ENST00000637871 DOCK3Q8IZD9 2030 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 UBE4BO95155 1302 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 RBBP6Q7Z6E9 1792 aaKnown RBP20.23■□□□□ 0.83
CLN3-263ENST00000637871 EIF3CLB5ME19 914 aaKnown RBP20.23■□□□□ 0.83
CLN3-263ENST00000637871 NFIBO00712 420 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 EIF3DO15371 548 aaKnown RBP eCLIP20.23■□□□□ 0.83
CLN3-263ENST00000637871 FKTNO75072 461 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 CCNA1P78396 465 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 NFIL3Q16649 462 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 KNOP1Q1ED39 458 aaKnown RBP20.23■□□□□ 0.83
CLN3-263ENST00000637871 B3GNT9Q6UX72 402 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 EPM2AIP1Q7L775 607 aaPredicted RBP20.23■□□□□ 0.83
CLN3-263ENST00000637871 EIF3CQ99613 913 aaKnown RBP20.23■□□□□ 0.83
CLN3-263ENST00000637871 MRPL44Q9H9J2 332 aaKnown RBP20.23■□□□□ 0.83
CLN3-263ENST00000637871 ODF2LQ9ULJ1 636 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 PLAGL2Q9UPG8 496 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 HTTP42858 3142 aa20.23■□□□□ 0.83
CLN3-263ENST00000637871 EFCAB8A8MWE9 144 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 RNF225M0QZC1 329 aaPredicted RBP20.22■□□□□ 0.83
CLN3-263ENST00000637871 SLITRK3O94933 977 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 PSMC4P43686 418 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 LRRC41Q15345 812 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 PCNX4Q63HM2 1172 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 GPR142Q7Z601 462 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 FRMD5Q7Z6J6 570 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 CYP2W1Q8TAV3 490 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 TBC1D5Q92609 795 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 SYN2Q92777 582 aaPredicted RBP20.22■□□□□ 0.83
CLN3-263ENST00000637871 METTL14Q9HCE5 456 aaKnown RBP20.22■□□□□ 0.83
CLN3-263ENST00000637871 FRMPD4Q14CM0 1322 aa20.22■□□□□ 0.83
CLN3-263ENST00000637871 TRIM59Q8IWR1 403 aa20.21■□□□□ 0.83
CLN3-263ENST00000637871 NEK11Q8NG66 645 aa20.21■□□□□ 0.83
CLN3-263ENST00000637871 CLEC4DQ8WXI8 215 aa20.21■□□□□ 0.83
CLN3-263ENST00000637871 REEP2Q9BRK0 252 aa20.21■□□□□ 0.83
CLN3-263ENST00000637871 BHMT2Q9H2M3 363 aa20.21■□□□□ 0.83
CLN3-263ENST00000637871 TYW1Q9NV66 732 aaKnown RBP20.21■□□□□ 0.83
CLN3-263ENST00000637871 IPO5O00410 1097 aaKnown RBP20.2■□□□□ 0.82
CLN3-263ENST00000637871 EML1O00423 815 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 TNPO2O14787 897 aaKnown RBP20.2■□□□□ 0.82
CLN3-263ENST00000637871 PSMC6P62333 389 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 ADAM9Q13443 819 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 RINT1Q6NUQ1 792 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 WDR59Q6PJI9 974 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 TSGA10Q9BZW7 698 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 TBC1D22BQ9NU19 505 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.2■□□□□ 0.82
CLN3-263ENST00000637871 MRFAP1Q9Y605 127 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 CTAGE9A4FU28 777 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 SLC16A3O15427 465 aaKnown RBP20.2■□□□□ 0.82
CLN3-263ENST00000637871 KRT86O43790 486 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 FAM13AO94988 1023 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 SLC25A27O95847 323 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 MAPK4P31152 587 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 C1orf186Q6ZWK4 172 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 SHCBP1Q8NEM2 672 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 UBXN4Q92575 508 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 WDR24Q96S15 920 aa20.2■□□□□ 0.82
CLN3-263ENST00000637871 CHP1Q99653 195 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms