RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MYOCDQ8IZQ8 938 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 FAM20AQ96MK3 541 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 PRUNE2Q8WUY3 3088 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 EPOPA6NHQ4 379 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 KRT2P35908 639 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 NR5A1Q13285 461 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 UGCGQ16739 394 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 SP7Q8TDD2 431 aaPredicted RBP21.7■■□□□ 1.06
CLN3-260ENST00000637578 NAP1L4Q99733 375 aaKnown RBP21.7■■□□□ 1.06
CLN3-260ENST00000637578 CEP131Q9UPN4 1083 aa21.7■■□□□ 1.06
CLN3-260ENST00000637578 A0A0C4DFX4 3053 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 MYH9P35579 1960 aaKnown RBP21.69■■□□□ 1.06
CLN3-260ENST00000637578 M0QZ92 97 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 ENPP3O14638 875 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 TBX3O15119 743 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 CHMP2AO43633 222 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 MMP1P03956 469 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 TMEM62Q0P6H9 643 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 MIER3Q7Z3K6 550 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 SPRED2Q7Z698 418 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 LLPHQ9BRT6 129 aaKnown RBP21.69■■□□□ 1.06
CLN3-260ENST00000637578 NRBP2Q9NSY0 501 aa21.69■■□□□ 1.06
CLN3-260ENST00000637578 LINC01553A4QN01 128 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 FAM205CA6NFA0 338 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 MAGEB2O15479 319 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 STBD1O95210 358 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 OATP04181 439 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 PPP2R5CQ13362 524 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 KRT40Q6A162 431 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 FAM117BQ6P1L5 589 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 FAM43BQ6ZT52 329 aaPredicted RBP21.68■■□□□ 1.06
CLN3-260ENST00000637578 LINC01465Q8N7H1 131 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 HAS1Q92839 578 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 ZSCAN31Q96LW9 406 aaPredicted RBP21.68■■□□□ 1.06
CLN3-260ENST00000637578 CERS4Q9HA82 394 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 BRMS1Q9HCU9 246 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 VAV3Q9UKW4 847 aa21.68■■□□□ 1.06
CLN3-260ENST00000637578 CCNT1O60563 726 aaKnown RBP21.67■■□□□ 1.06
CLN3-260ENST00000637578 CD52P31358 61 aa21.67■■□□□ 1.06
CLN3-260ENST00000637578 ERVK-21P61565 698 aa21.67■■□□□ 1.06
CLN3-260ENST00000637578 PRKCEQ02156 737 aa21.67■■□□□ 1.06
CLN3-260ENST00000637578 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.67■■□□□ 1.06
CLN3-260ENST00000637578 SH2B1Q9NRF2 756 aaPredicted RBP21.67■■□□□ 1.06
CLN3-260ENST00000637578 UNC80Q8N2C7 3258 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 BTBD18B2RXH4 712 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 RFXAPO00287 272 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 MCM2P49736 904 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 TARBP2Q15633 366 aaKnown RBP21.66■■□□□ 1.06
CLN3-260ENST00000637578 TRMT1LQ7Z2T5 733 aaKnown RBP21.66■■□□□ 1.06
CLN3-260ENST00000637578 CRIPAKQ8N1N5 446 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 ARNTL2Q8WYA1 636 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 NIFKQ9BYG3 293 aaKnown RBP21.66■■□□□ 1.06
CLN3-260ENST00000637578 CDHR5Q9HBB8 845 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 PADI3Q9ULW8 664 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 WDR81Q562E7 1941 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 TRANK1O15050 2925 aa21.66■■□□□ 1.06
CLN3-260ENST00000637578 EML1O00423 815 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 LPXNO60711 386 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 IGFBP4P22692 258 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 RTN4RL1Q86UN2 441 aaPredicted RBP21.65■■□□□ 1.06
CLN3-260ENST00000637578 CCDC83Q8IWF9 413 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 DIS3L2Q8IYB7 885 aaKnown RBP21.65■■□□□ 1.06
CLN3-260ENST00000637578 LINC01599Q8WXQ3 324 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 TGS1Q96RS0 853 aaKnown RBP21.65■■□□□ 1.06
CLN3-260ENST00000637578 CEP89Q96ST8 783 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 FTHL17Q9BXU8 183 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 COL4A6Q14031 1691 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 GPR32O75388 356 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 XKR3Q5GH77 459 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 TMX3Q96JJ7 454 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 MTCH2Q9Y6C9 303 aa21.65■■□□□ 1.06
CLN3-260ENST00000637578 UPP2O95045 317 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 TRIM29Q14134 588 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 EFCAB12Q6NXP0 572 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 POTEDQ86YR6 584 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 ZNF710Q8N1W2 664 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 METTL13Q8N6R0 699 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 TMEM40Q8WWA1 233 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 TSPYL2Q9H2G4 693 aaPredicted RBP21.64■■□□□ 1.05
CLN3-260ENST00000637578 TMX1Q9H3N1 280 aa21.64■■□□□ 1.05
CLN3-260ENST00000637578 RC3H2Q9HBD1 1191 aaKnown RBP21.64■■□□□ 1.05
CLN3-260ENST00000637578 CRYBB1P53674 252 aaPredicted RBP21.63■■□□□ 1.05
CLN3-260ENST00000637578 PSMC5P62195 406 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 SPIRE1Q08AE8 756 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 PAK2Q13177 524 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 YME1L1Q96TA2 773 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 SUGCTQ9HAC7 445 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 ERVK-5Q9HDB9 667 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 NOC2LQ9Y3T9 749 aaKnown RBP21.63■■□□□ 1.05
CLN3-260ENST00000637578 TTC3P53804 2025 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 EVPLQ92817 2033 aa21.63■■□□□ 1.05
CLN3-260ENST00000637578 TMOD1P28289 359 aa21.62■■□□□ 1.05
CLN3-260ENST00000637578 CLCN3P51790 818 aa21.62■■□□□ 1.05
CLN3-260ENST00000637578 HMGN5P82970 282 aaKnown RBP21.62■■□□□ 1.05
CLN3-260ENST00000637578 GRB10Q13322 594 aa21.62■■□□□ 1.05
CLN3-260ENST00000637578 SLFN12Q8IYM2 578 aa21.62■■□□□ 1.05
CLN3-260ENST00000637578 ADAMTS10Q9H324 1103 aa21.62■■□□□ 1.05
CLN3-260ENST00000637578 IGKV6-21A0A0C4DH24 114 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 VTNP04004 478 aa21.61■■□□□ 1.05
CLN3-260ENST00000637578 KIZQ2M2Z5 673 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms