RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 DBF4BQ8NFT6 615 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 TBCKQ8TEA7 893 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 DNAJB3Q8WWF6 145 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 CRYGNQ8WXF5 182 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 SEPT8Q92599 483 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 EDAQ92838 391 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 PBXIP1Q96AQ6 731 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 PCYT2Q99447 389 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 C17orf80Q9BSJ5 609 aa13.16□□□□□ -0.3
CLN3-257ENST00000637110 FAM49AQ9H0Q0 323 aaPredicted RBP13.16□□□□□ -0.3
CLN3-257ENST00000637110 NSUN3Q9H649 340 aaKnown RBP13.16□□□□□ -0.3
CLN3-257ENST00000637110 ORC3Q9UBD5 711 aaPredicted RBP13.16□□□□□ -0.3
CLN3-257ENST00000637110 PTPRZ1P23471 2315 aaPredicted RBP13.15□□□□□ -0.3
CLN3-257ENST00000637110 CCDC194A0A1B0GVG4 234 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 GAS7O60861 476 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 CCNE2O96020 404 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 AMHP03971 560 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 PSAPP07602 524 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 CIITAP33076 1130 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 KRT76Q01546 638 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 MBTPS1Q14703 1052 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 COL19A1Q14993 1142 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 NONOQ15233 471 aaKnown RBP eCLIP13.15□□□□□ -0.3
CLN3-257ENST00000637110 SMAD2Q15796 467 aaKnown RBP13.15□□□□□ -0.3
CLN3-257ENST00000637110 TCEAL5Q5H9L2 206 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 TRAF7Q6Q0C0 670 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 RUFY4Q6ZNE9 571 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 ZBTB10Q96DT7 871 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 CLDND1Q9NY35 253 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 MICAL3Q7RTP6 2002 aa13.15□□□□□ -0.3
CLN3-257ENST00000637110 ZFHX2Q9C0A1 2572 aaPredicted RBP13.14□□□□□ -0.31
CLN3-257ENST00000637110 TMEM221A6NGB7 291 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 RBAK-RBAKDNI3L0D1 243 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 M0QZ92 97 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 M0R296 226 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 DHX15O43143 795 aaKnown RBP13.14□□□□□ -0.31
CLN3-257ENST00000637110 CHMP2AO43633 222 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 MARCH6O60337 910 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 ATG7O95352 703 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 SLC26A2P50443 739 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 FOSBP53539 338 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 ADAM17P78536 824 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 TCF15Q12870 199 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 ME3Q16798 604 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 INF2Q27J81 1249 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 TCTN1Q2MV58 587 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 EPC2Q52LR7 807 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 IER5LQ5T953 404 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 ZNF746Q6NUN9 644 aaPredicted RBP13.14□□□□□ -0.31
CLN3-257ENST00000637110 ABHD15Q6UXT9 468 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 KRT25Q7Z3Z0 450 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 RNF135Q8IUD6 432 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 SMAP1Q8IYB5 467 aaPredicted RBP13.14□□□□□ -0.31
CLN3-257ENST00000637110 FAM177A1Q8N128 213 aaPredicted RBP13.14□□□□□ -0.31
CLN3-257ENST00000637110 TRAPPC12Q8WVT3 735 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 TEKT3Q9BXF9 490 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 GABBR1Q9UBS5 961 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 CACNA1HO95180 2353 aa13.14□□□□□ -0.31
CLN3-257ENST00000637110 STK36Q9NRP7 1315 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 H3BNC9 293 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 MSH4O15457 936 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 HBP1O60381 514 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 LARGE1O95461 756 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 TDP2O95551 362 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 GHRP10912 638 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 TMEM62Q0P6H9 643 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 GPM6BQ13491 265 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 TRIM29Q14134 588 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 LETM2Q2VYF4 491 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 PLEKHG4Q58EX7 1191 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 MARCH8Q5T0T0 291 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 LRCH2Q5VUJ6 765 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 IER5Q5VY09 327 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLN3-257ENST00000637110 TRIM67Q6ZTA4 783 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 CCDC60Q8IWA6 550 aaPredicted RBP13.13□□□□□ -0.31
CLN3-257ENST00000637110 MYOCDQ8IZQ8 938 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 DAGLBQ8NCG7 672 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 GTF3C6Q969F1 213 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 PHF20Q9BVI0 1012 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 BRMS1Q9HCU9 246 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 GJB4Q9NTQ9 266 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 PCDHA10Q9Y5I2 948 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 CDY2AQ9Y6F7 541 aa13.13□□□□□ -0.31
CLN3-257ENST00000637110 NLRC5Q86WI3 1866 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 KMT2EQ8IZD2 1858 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 C5orf42Q9H799 3197 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 IGKV6D-21A0A0A0MT36 114 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 MBLAC1A4D2B0 266 aaPredicted RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 WDR64B1ANS9 1081 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 UPP2O95045 317 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 CTDNEP1O95476 244 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 CHRNA1P02708 482 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 RPLP2P05387 115 aaKnown RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 KLRC1P26715 233 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 MRPS6P82932 125 aaKnown RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 HTRA4P83105 476 aaPredicted RBP13.12□□□□□ -0.31
CLN3-257ENST00000637110 ZNF484Q5JVG2 852 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 FAM26DQ5JW98 314 aa13.12□□□□□ -0.31
CLN3-257ENST00000637110 MTHFD1LQ6UB35 978 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms