RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CEP170P1Q96L14 293 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 ANKEF1Q9NU02 776 aa22.3■■□□□ 1.16
CLN3-250ENST00000636839 SEPT9Q9UHD8 586 aaPredicted RBP22.3■■□□□ 1.16
CLN3-250ENST00000636839 RBM47A0AV96 593 aaKnown RBP22.29■■□□□ 1.16
CLN3-250ENST00000636839 TRPA1O75762 1119 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 SMPD1P17405 629 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 ZNF75DP51815 510 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 TTI2Q6NXR4 508 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 MYCT1Q8N699 235 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 SCFD1Q8WVM8 642 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 PPP1R9BQ96SB3 815 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 GABRQQ9UN88 632 aa22.29■■□□□ 1.16
CLN3-250ENST00000636839 NOP56O00567 594 aaKnown RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 PSMA7O14818 248 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 FAM13AO94988 1023 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 ALDH1A1P00352 501 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 HOXC6P09630 235 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 MYBP10242 640 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 GUCY2CP25092 1073 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 MARK3P27448 753 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 LACTBP83111 547 aaPredicted RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 STIM1Q13586 685 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 CCDC144BQ3MJ40 725 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 NELFCDQ8IXH7 590 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 P2RX5Q93086 422 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 DHTKD1Q96HY7 919 aaPredicted RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 DUSP9Q99956 384 aaKnown RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 SLC5A4Q9NY91 659 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 NMT1P30419 496 aaKnown RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 STAT5BP51692 787 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 PTPN21Q16825 1174 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 LENG1Q96BZ8 264 aaPredicted RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 CCDC43Q96MW1 224 aaKnown RBP22.28■■□□□ 1.16
CLN3-250ENST00000636839 ABHD16BQ9H3Z7 469 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 IFNKQ9P0W0 207 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 COL4A3BPQ9Y5P4 624 aa22.28■■□□□ 1.16
CLN3-250ENST00000636839 HOXD13P35453 343 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 FANCCQ00597 558 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 KCNA1Q09470 495 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 CCDC173Q0VFZ6 552 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 MTERF2Q49AM1 385 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 SARM1Q6SZW1 724 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 KSR1Q8IVT5 923 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 MYOCDQ8IZQ8 938 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 GUF1Q8N442 669 aaKnown RBP22.27■■□□□ 1.16
CLN3-250ENST00000636839 NAP1L5Q96NT1 182 aaPredicted RBP22.27■■□□□ 1.16
CLN3-250ENST00000636839 FIZ1Q96SL8 496 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 IKZF4Q9H2S9 585 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 MRPL44Q9H9J2 332 aaKnown RBP22.27■■□□□ 1.16
CLN3-250ENST00000636839 ZNF236Q9UL36 1845 aa22.27■■□□□ 1.16
CLN3-250ENST00000636839 CCNE1P24864 410 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 RGS2P41220 211 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 ZNF131P52739 623 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 ZC2HC1CQ53FD0 456 aaPredicted RBP22.26■■□□□ 1.15
CLN3-250ENST00000636839 COBLL1Q53SF7 1204 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 XKR3Q5GH77 459 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 AFG1LQ8WV93 481 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 PARVGQ9HBI0 331 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 CYP26B1Q9NR63 512 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 KCND2Q9NZV8 630 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 PRPF6O94906 941 aaKnown RBP22.26■■□□□ 1.15
CLN3-250ENST00000636839 OATP04181 439 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 TPM4P67936 248 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 IRX5P78411 483 aaPredicted RBP22.26■■□□□ 1.15
CLN3-250ENST00000636839 TPD52L1Q16890 204 aaPredicted RBP22.26■■□□□ 1.15
CLN3-250ENST00000636839 CDKAL1Q5VV42 579 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 CENPPQ6IPU0 288 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 OTUD6AQ7L8S5 288 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 IRF2BP1Q8IU81 584 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 SPC24Q8NBT2 197 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 GLG1Q92896 1179 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 XPO4Q9C0E2 1151 aaKnown RBP22.26■■□□□ 1.15
CLN3-250ENST00000636839 RNF186Q9NXI6 227 aa22.26■■□□□ 1.15
CLN3-250ENST00000636839 CDK11BP21127 795 aaKnown RBP22.25■■□□□ 1.15
CLN3-250ENST00000636839 FAM102BQ5T8I3 360 aa22.25■■□□□ 1.15
CLN3-250ENST00000636839 SRRTQ9BXP5 876 aaKnown RBP22.25■■□□□ 1.15
CLN3-250ENST00000636839 MYH9P35579 1960 aaKnown RBP22.25■■□□□ 1.15
CLN3-250ENST00000636839 FCGRTP55899 365 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 ODR4Q5SWX8 454 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 EPM2AIP1Q7L775 607 aaPredicted RBP22.24■■□□□ 1.15
CLN3-250ENST00000636839 CREBRFQ8IUR6 639 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 APBA2Q99767 749 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 ODF2LQ9ULJ1 636 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 NKRFO15226 690 aaKnown RBP eCLIP22.24■■□□□ 1.15
CLN3-250ENST00000636839 DKC1O60832 514 aaKnown RBP eCLIP22.24■■□□□ 1.15
CLN3-250ENST00000636839 LGR5O75473 907 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 GCNT3O95395 438 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 SERPINC1P01008 464 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 GH1P01241 217 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 ZNF865P0CJ78 1059 aaPredicted RBP22.24■■□□□ 1.15
CLN3-250ENST00000636839 LAMC2Q13753 1193 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 DUSP28Q4G0W2 176 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 AFAP1L1Q8TED9 768 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 SOCS4Q8WXH5 440 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 AZI2Q9H6S1 392 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 XPNPEP1Q9NQW7 623 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 PDLIM7Q9NR12 457 aa22.24■■□□□ 1.15
CLN3-250ENST00000636839 IGHA2P01877 340 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 GAP43P17677 238 aa22.23■■□□□ 1.15
CLN3-250ENST00000636839 FLT3LGP49771 235 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms