RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RAB27AP51159 221 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 ALDH5A1P51649 535 aaPredicted RBP11.77□□□□□ -0.53
UPF3A-212ENST00000619079 RNASE9P60153 205 aaKnown RBP11.77□□□□□ -0.53
UPF3A-212ENST00000619079 NCALDP61601 193 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 CHRNDQ07001 517 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 CC2D2BQ6DHV5 1058 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 BLIDQ8IZY5 108 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 HELBQ8NG08 1087 aaPredicted RBP11.77□□□□□ -0.53
UPF3A-212ENST00000619079 MDM1Q8TC05 714 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 KLHL29Q96CT2 875 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 FMO2Q99518 471 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 TSC22D3Q99576 134 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 NEUROG2Q9H2A3 272 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 SH3GLB2Q9NR46 395 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 PNMA2Q9UL42 364 aa11.77□□□□□ -0.53
UPF3A-212ENST00000619079 KIAA1551Q9HCM1 1747 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 E7ENQ6 273 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 C6orf229H3BNL8 230 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 KRIT1O00522 736 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 DAPK3O43293 454 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 PRKAB2O43741 272 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 PAPOLAP51003 745 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 ROR2Q01974 943 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 PUM3Q15397 648 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 PPP2R5EQ16537 467 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 DDX42Q86XP3 938 aaKnown RBP eCLIP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 LRRC34Q8IZ02 419 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 RTKN2Q8IZC4 609 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 LCORLQ8N3X6 602 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 ELAC2Q9BQ52 826 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 SELENOSQ9BQE4 189 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 SEMA6BQ9H3T3 888 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 ECT2Q9H8V3 914 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 TAF1P21675 1872 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 SLX4Q8IY92 1834 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 MYH7BA7E2Y1 1941 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 O00370 1275 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 AP1G2O75843 785 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 AGTP01019 485 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 VIMP08670 466 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 RARAP10276 462 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 COPS2P61201 443 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 MRPS35P82673 323 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 TAF11Q15544 211 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 CMPK2Q5EBM0 449 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 LMNTD2Q8IXW0 634 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 NEK9Q8TD19 979 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 C7orf43Q8WVR3 580 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 NAF1Q96HR8 494 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 OSBPL1AQ9BXW6 950 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 PACSIN2Q9UNF0 486 aaPredicted RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 NOC2LQ9Y3T9 749 aaKnown RBP11.76□□□□□ -0.53
UPF3A-212ENST00000619079 CACNA1SQ13698 1873 aa11.76□□□□□ -0.53
UPF3A-212ENST00000619079 DOCK2Q92608 1830 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 CCDC194A0A1B0GVG4 234 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 LRRD1A4D1F6 860 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 IGF2BP3O00425 579 aaKnown RBP eCLIP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 GRIN3BO60391 1043 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 UFL1O94874 794 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 SUN1O94901 812 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 UBOX5O94941 541 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 RTN3O95197 1032 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 LINGO3P0C6S8 592 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 PLCG1P19174 1290 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 ATP4AP20648 1035 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 MSH2P43246 934 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 KCNJ2P63252 427 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 GPSM2P81274 684 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 SLC5A9Q2M3M2 681 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 GALNTL6Q49A17 601 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 CWF19L1Q69YN2 538 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 CABP7Q86V35 215 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 GUF1Q8N442 669 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 ZFAND2BQ8WV99 257 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 TBC1D5Q92609 795 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 TSG101Q99816 390 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 ANKRD2Q9GZV1 360 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 TAOK3Q9H2K8 898 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 ARHGEF3Q9NR81 526 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 PAPOLBQ9NRJ5 636 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 GGA1Q9UJY5 639 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 AGAP1Q9UPQ3 857 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 USP15Q9Y4E8 981 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 COL4A1P02462 1669 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 DLEC1Q9Y238 1755 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 ATP8B3O60423 1300 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 MROH5Q6ZUA9 1318 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 MPHOSPH10O00566 681 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 IRF6O14896 467 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 RGS16O15492 202 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 SNX3O60493 162 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 CAND2O75155 1236 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 FCER1AP12319 257 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 GBP1P32455 592 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 FLT3P36888 993 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 SKIV2L2P42285 1042 aaKnown RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 CTCFP49711 727 aaPredicted RBP11.75□□□□□ -0.53
UPF3A-212ENST00000619079 BNIP1Q12981 228 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 FAM83BQ5T0W9 1011 aa11.75□□□□□ -0.53
UPF3A-212ENST00000619079 C6orf118Q5T5N4 469 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms