RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 RNF216Q9NWF9 866 aaPredicted RBP21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 SAMM50Q9Y512 469 aa21.57■■□□□ 1.04
CCDC28A-203ENST00000617445 RALGAPA2Q2PPJ7 1873 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 ZBTB42B2RXF5 422 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 H3BNC9 293 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 M0R2N6 131 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 MSH4O15457 936 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 MAGEB2O15479 319 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 EDIL3O43854 480 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 GAS7O60861 476 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 RB1P06400 928 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 JAK3P52333 1124 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 RDM1Q8NG50 284 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 SLC5A5Q92911 643 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 MRPL38Q96DV4 380 aaKnown RBP21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 LARP6Q9BRS8 491 aaKnown RBP21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 DISC1Q9NRI5 854 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 GABBR1Q9UBS5 961 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 PADI3Q9ULW8 664 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 NLRC5Q86WI3 1866 aa21.56■■□□□ 1.04
CCDC28A-203ENST00000617445 REV3LO60673 3130 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 STAG3L1P0CL83 205 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 TMEM62Q0P6H9 643 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 ADAMTS19Q8TE59 1207 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 UIMC1Q96RL1 719 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 TEKT3Q9BXF9 490 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 NRBP2Q9NSY0 501 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 SPTBN5Q9NRC6 3674 aaKnown RBP21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 STK36Q9NRP7 1315 aa21.55■■□□□ 1.04
CCDC28A-203ENST00000617445 TNFRSF10AO00220 468 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 PFKFB2O60825 505 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 C22orf31O95567 290 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 BMP1P13497 986 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 SCRN1Q12765 414 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 NONOQ15233 471 aaKnown RBP eCLIP21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 LRCH2Q5VUJ6 765 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 KRT25Q7Z3Z0 450 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 NPAS4Q8IUM7 802 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 ZNF689Q96CS4 500 aaPredicted RBP21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 BDP1A6H8Y1 2624 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 ADGRA3Q8IWK6 1321 aa21.54■■□□□ 1.04
CCDC28A-203ENST00000617445 C5orf67F2Z3F1 127 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 GPR182O15218 404 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 DGKIO75912 1065 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 TMOD1P28289 359 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 CRYBB1P53674 252 aaPredicted RBP21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 GPM6BQ13491 265 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 NPY5RQ15761 445 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 RTN4RL1Q86UN2 441 aaPredicted RBP21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 WASF1Q92558 559 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 CLP1Q92989 425 aaKnown RBP21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 MBOAT7Q96N66 472 aa21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 RC3H2Q9HBD1 1191 aaKnown RBP21.53■■□□□ 1.04
CCDC28A-203ENST00000617445 RBAK-RBAKDNI3L0D1 243 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 RPS6KA5O75582 802 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 PSMD10O75832 226 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 BMPR1AP36894 532 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 TFF2Q03403 129 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 TIGD5Q53EQ6 642 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 CRIPAKQ8N1N5 446 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 METTL13Q8N6R0 699 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 UHRF1Q96T88 793 aaPredicted RBP21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 C11orf84Q9BUA3 381 aaPredicted RBP21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 PHF20Q9BVI0 1012 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 TPCN1Q9ULQ1 816 aa21.52■■□□□ 1.04
CCDC28A-203ENST00000617445 TCF20Q9UGU0 1960 aaKnown RBP21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 OATP04181 439 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 NFX1Q12986 1120 aaKnown RBP21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 BTG3Q14201 252 aaPredicted RBP21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 CMTR2Q8IYT2 770 aaKnown RBP21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 LINC01599Q8WXQ3 324 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 AIFM3Q96NN9 605 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 MAP7D2Q96T17 732 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 NAP1L4Q99733 375 aaKnown RBP21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 PLVAPQ9BX97 442 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 LMAN2LQ9H0V9 348 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 UNC45AQ9H3U1 944 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 ERVK-5Q9HDB9 667 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 C1orf112Q9NSG2 853 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 GINS2Q9Y248 185 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 MYO7AQ13402 2215 aa21.51■■□□□ 1.03
CCDC28A-203ENST00000617445 CCDC194A0A1B0GVG4 234 aa21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 ZNF862O60290 1169 aa21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 GCFC2P16383 781 aaKnown RBP21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 CTNNB1P35222 781 aa21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 NAALADL2Q58DX5 795 aa21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 MIER3Q7Z3K6 550 aa21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 DDX25Q9UHL0 483 aaKnown RBP21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 LRFN2Q9ULH4 789 aa21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 NOC2LQ9Y3T9 749 aaKnown RBP21.5■■□□□ 1.03
CCDC28A-203ENST00000617445 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 CHMP2AO43633 222 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 GPR32O75388 356 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 TDP2O95551 362 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 SARSP49591 514 aaKnown RBP21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 AK2P54819 239 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 CDC42EP1Q00587 391 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 PRKCEQ02156 737 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 PPP4R3AQ6IN85 833 aa21.49■■□□□ 1.03
CCDC28A-203ENST00000617445 EFCAB12Q6NXP0 572 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms