RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 TNNI1P19237 187 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 HHIPL2Q6UWX4 724 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 CACNA2D3Q8IZS8 1091 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 BANK1Q8NDB2 785 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 GLIS3Q8NEA6 775 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 SCLT1Q96NL6 688 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 ACCSQ96QU6 501 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 TAF1DQ9H5J8 278 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 PARP2Q9UGN5 583 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 PARP4Q9UKK3 1724 aaKnown RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 ABCC6O95255 1503 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 HMGB1P1B2RPK0 211 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 KRT14P02533 472 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 GYS1P13807 737 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 RPA1P27694 616 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 MXI1P50539 228 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 PRELPP51888 382 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 MUM1L1Q5H9M0 696 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 CROCCP2Q86T23 111 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 PROCA1Q8NCQ7 364 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 MTMR8Q96EF0 704 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 FMO2Q99518 471 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 SYNCQ9H7C4 482 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 PITPNM2Q9BZ72 1349 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 GOLGA8IPA6NC78 632 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 GOLGA8JA6NMD2 632 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 EPHB6O15197 1021 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 SORBS3O60504 671 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 PDE6CP51160 858 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 DR1Q01658 176 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 STRN3Q13033 797 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 ARHGEF16Q5VV41 709 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 MCF2L2Q86YR7 1114 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 MTMR9Q96QG7 549 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIG4-204ENST00000611712 TMEM206Q9H813 350 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 AMACRQ9UHK6 382 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 NOC2LQ9Y3T9 749 aaKnown RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 FAM169AQ9Y6X4 670 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 PDE2AO00408 941 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 SART1O43290 800 aaKnown RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 GAS8O95995 478 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 MAGEA9P43362 315 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 GCLMP48507 274 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 RHBDL3P58872 404 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 ZNF211Q13398 564 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 MIIPQ5JXC2 388 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 LIN9Q5TKA1 542 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 GKAP1Q5VSY0 366 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 SPATS2Q86XZ4 545 aaKnown RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 MGARPQ8TDB4 240 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 HDAC7Q8WUI4 952 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 SCFD1Q8WVM8 642 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 POMGNT1Q8WZA1 660 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 SYN2Q92777 582 aaPredicted RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 ZNF653Q96CK0 615 aa9.42□□□□□ -0.9
LIG4-204ENST00000611712 MMTAG2Q9BU76 263 aaKnown RBP9.42□□□□□ -0.9
LIG4-204ENST00000611712 AFF2P51816 1311 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 HGSO14964 777 aaPredicted RBP9.41□□□□□ -0.9
LIG4-204ENST00000611712 TBX3O15119 743 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 RGL2O15211 777 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 DKC1O60832 514 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIG4-204ENST00000611712 PRLRP16471 622 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 MFAP3P55082 362 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 TAOK1Q7L7X3 1001 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 OTUD6AQ7L8S5 288 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 NT5C1BQ96P26 610 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 PACSIN1Q9BY11 444 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 DDX4Q9NQI0 724 aaKnown RBP9.41□□□□□ -0.9
LIG4-204ENST00000611712 NKIRAS1Q9NYS0 192 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 ATP2A1O14983 1001 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 AMPD2Q01433 879 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 DMP1Q13316 513 aaPredicted RBP9.41□□□□□ -0.9
LIG4-204ENST00000611712 AOC3Q16853 763 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 ZC2HC1CQ53FD0 456 aaPredicted RBP9.41□□□□□ -0.9
LIG4-204ENST00000611712 KLHDC7AQ5VTJ3 777 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 PADI6Q6TGC4 694 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 NIM1KQ8IY84 436 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 RUBCNQ92622 972 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 FAM163AQ96GL9 167 aaPredicted RBP9.41□□□□□ -0.9
LIG4-204ENST00000611712 BCS1LQ9Y276 419 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 SIK3Q9Y2K2 1263 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 SNX24Q9Y343 169 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 RSPH10B2B2RC85 870 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 RSPH10BP0C881 870 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 EIF2AK2P19525 551 aaKnown RBP9.41□□□□□ -0.9
LIG4-204ENST00000611712 IRAK1P51617 712 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 GALCP54803 685 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 SLC27A3Q5K4L6 730 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 ZIM3Q96PE6 472 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 C1orf112Q9NSG2 853 aa9.41□□□□□ -0.9
LIG4-204ENST00000611712 IPO5O00410 1097 aaKnown RBP9.4□□□□□ -0.9
LIG4-204ENST00000611712 HNRNPDLO14979 420 aaKnown RBP9.4□□□□□ -0.9
LIG4-204ENST00000611712 DAPK3O43293 454 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 RAD51CO43502 376 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 ATP5DP30049 168 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 SOX5P35711 763 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 PEX3P56589 373 aa9.4□□□□□ -0.9
LIG4-204ENST00000611712 ZNF746Q6NUN9 644 aaPredicted RBP9.4□□□□□ -0.9
LIG4-204ENST00000611712 INTS8Q75QN2 995 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms