RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 SEPT8Q92599 483 aa13.02□□□□□ -0.33
LINC00539-204ENST00000608957 FAM49AQ9H0Q0 323 aaPredicted RBP13.02□□□□□ -0.33
LINC00539-204ENST00000608957 UNC45AQ9H3U1 944 aa13.02□□□□□ -0.33
LINC00539-204ENST00000608957 PRDM6Q9NQX0 595 aa13.02□□□□□ -0.33
LINC00539-204ENST00000608957 PCDHA2Q9Y5H9 948 aa13.02□□□□□ -0.33
LINC00539-204ENST00000608957 MAFBQ9Y5Q3 323 aaPredicted RBP13.02□□□□□ -0.33
LINC00539-204ENST00000608957 IGSF9BQ9UPX0 1349 aa13.02□□□□□ -0.33
LINC00539-204ENST00000608957 UNC80Q8N2C7 3258 aa13.02□□□□□ -0.33
LINC00539-204ENST00000608957 FNDC1Q4ZHG4 1894 aaPredicted RBP13.02□□□□□ -0.33
LINC00539-204ENST00000608957 FAM205CA6NFA0 338 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 DDX11L8A8MPP1 907 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 SLC37A4O43826 429 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 ZNF862O60290 1169 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 HBP1O60381 514 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 EFCAB14O75071 495 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 PSMD10O75832 226 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 SLC26A2P50443 739 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 MRPS6P82932 125 aaKnown RBP13.01□□□□□ -0.33
LINC00539-204ENST00000608957 KRT76Q01546 638 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 TMEM62Q0P6H9 643 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 INF2Q27J81 1249 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 FBXO47Q5MNV8 452 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 FAM160B1Q5W0V3 765 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 KRT40Q6A162 431 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 B3GNT9Q6UX72 402 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 FERMT3Q86UX7 667 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 MYOCDQ8IZQ8 938 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 FAM177A1Q8N128 213 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-204ENST00000608957 ETNPPLQ8TBG4 499 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 LINC01599Q8WXQ3 324 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 GAS2L1Q99501 681 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-204ENST00000608957 IFIH1Q9BYX4 1025 aaKnown RBP13.01□□□□□ -0.33
LINC00539-204ENST00000608957 ZSCAN16Q9H4T2 348 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-204ENST00000608957 AGO3Q9H9G7 860 aaKnown RBP13.01□□□□□ -0.33
LINC00539-204ENST00000608957 GABBR1Q9UBS5 961 aa13.01□□□□□ -0.33
LINC00539-204ENST00000608957 TRANK1O15050 2925 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 COL1A2P08123 1366 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 SMIM35A0A1B0GVV1 85 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 LINC01553A4QN01 128 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 GOLGA6L22H0YM25 854 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 PSAPP07602 524 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 XBP1P17861 261 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 KLRC1P26715 233 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 HTRA4P83105 476 aaPredicted RBP13□□□□□ -0.33
LINC00539-204ENST00000608957 NONOQ15233 471 aaKnown RBP eCLIP13□□□□□ -0.33
LINC00539-204ENST00000608957 MCTP1Q6DN14 999 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 GALNT17Q6IS24 598 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 KRT25Q7Z3Z0 450 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 PHF6Q8IWS0 365 aaKnown RBP eCLIP13□□□□□ -0.33
LINC00539-204ENST00000608957 SMAP1Q8IYB5 467 aaPredicted RBP13□□□□□ -0.33
LINC00539-204ENST00000608957 TNFRSF25Q93038 417 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 RIT2Q99578 217 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 RAD9AQ99638 391 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 CDHR5Q9HBB8 845 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 PCDHA10Q9Y5I2 948 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 TRPV2Q9Y5S1 764 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 MYO7AQ13402 2215 aa13□□□□□ -0.33
LINC00539-204ENST00000608957 TCF20Q9UGU0 1960 aaKnown RBP13□□□□□ -0.33
LINC00539-204ENST00000608957 BRWD1Q9NSI6 2320 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 WDR64B1ANS9 1081 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 KIF28PB7ZC32 967 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 CHMP2AO43633 222 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 LPXNO60711 386 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 C22orf31O95567 290 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 AMHP03971 560 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 IGFBP4P22692 258 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 CD52P31358 61 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 NR5A1Q13285 461 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 FOXD4L6Q3SYB3 417 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-204ENST00000608957 ZNF484Q5JVG2 852 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 LRCH2Q5VUJ6 765 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 MOXD1Q6UVY6 613 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 FOXD4L3Q6VB84 417 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-204ENST00000608957 TSHZ1Q6ZSZ6 1077 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 TRMT1LQ7Z2T5 733 aaKnown RBP12.99□□□□□ -0.33
LINC00539-204ENST00000608957 RSPH3Q86UC2 560 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 RTN4RL1Q86UN2 441 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-204ENST00000608957 KIAA0319LQ8IZA0 1049 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 SP7Q8TDD2 431 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-204ENST00000608957 PPM1EQ8WY54 764 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 ARNTL2Q8WYA1 636 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 APBB2Q92870 758 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 TOP1MTQ969P6 601 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 CHAMP1Q96JM3 812 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 ZBED2Q9BTP6 218 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 TEKT3Q9BXF9 490 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 DISC1Q9NRI5 854 aa12.99□□□□□ -0.33
LINC00539-204ENST00000608957 KDM3AQ9Y4C1 1321 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 WNT7AO00755 349 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 GAS7O60861 476 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 STBD1O95210 358 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 MMP1P03956 469 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 PTMSP20962 102 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 PRKCEQ02156 737 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 GRB10Q13322 594 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 NBR1Q14596 966 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 SAFBQ15424 915 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00539-204ENST00000608957 CCDC85BQ15834 202 aaPredicted RBP12.98□□□□□ -0.33
LINC00539-204ENST00000608957 LETM2Q2VYF4 491 aa12.98□□□□□ -0.33
LINC00539-204ENST00000608957 PIK3AP1Q6ZUJ8 805 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms