RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 HBP1O60381 514 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 RPS6KA5O75582 802 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 ITGB1P05556 798 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 LINC00271P0C7V0 271 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 LAG3P18627 525 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 MARK3P27448 753 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 LIFRP42702 1097 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 NRIP1P48552 1158 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 STAT5BP51692 787 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 IGBP1P78318 339 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 TMEM132AQ24JP5 1023 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 ZNF484Q5JVG2 852 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 MARCH8Q5T0T0 291 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 CES5AQ6NT32 575 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 NFXL1Q6ZNB6 911 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 RUFY4Q6ZNE9 571 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 UBALD2Q8IYN6 164 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 THNSL1Q8IYQ7 743 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 ZNF654Q8IZM8 581 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 KLHL23Q8NBE8 558 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 RASGRP4Q8TDF6 673 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 FAM49AQ9H0Q0 323 aaPredicted RBP7.18□□□□□ -1.26
CUX1-220ENST00000607092 ELAC1Q9H777 363 aaKnown RBP7.18□□□□□ -1.26
CUX1-220ENST00000607092 ATP6V0A4Q9HBG4 840 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 TMEM161AQ9NX61 479 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 CEP131Q9UPN4 1083 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 USP15Q9Y4E8 981 aaPredicted RBP7.18□□□□□ -1.26
CUX1-220ENST00000607092 SLC12A7Q9Y666 1083 aa7.18□□□□□ -1.26
CUX1-220ENST00000607092 BAZ2BQ9UIF8 2168 aaKnown RBP7.18□□□□□ -1.26
CUX1-220ENST00000607092 MAGEB2O15479 319 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 ZSCAN20P17040 1043 aaPredicted RBP7.17□□□□□ -1.26
CUX1-220ENST00000607092 ITGB5P18084 799 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 TMOD1P28289 359 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 CDC42EP1Q00587 391 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 PLCB3Q01970 1234 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 ITIH3Q06033 890 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 DLX2Q07687 328 aaPredicted RBP7.17□□□□□ -1.26
CUX1-220ENST00000607092 NFX1Q12986 1120 aaKnown RBP7.17□□□□□ -1.26
CUX1-220ENST00000607092 AP3B2Q13367 1082 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 PTPN21Q16825 1174 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 CEP55Q53EZ4 464 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 TMEM184AQ6ZMB5 413 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 NIPA1Q7RTP0 329 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 ABI1Q8IZP0 508 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 CRIPAKQ8N1N5 446 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 TMEM87AQ8NBN3 555 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 IGDCC4Q8TDY8 1250 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 ATP8B4Q8TF62 1192 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 RPGRIP1Q96KN7 1286 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 SNX27Q96L92 541 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 MXRA8Q9BRK3 442 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 BCAS3Q9H6U6 928 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 AGO3Q9H9G7 860 aaKnown RBP7.17□□□□□ -1.26
CUX1-220ENST00000607092 RGS18Q9NS28 235 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 KCNH7Q9NS40 1196 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 TBC1D22BQ9NU19 505 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 RBM28Q9NW13 759 aaKnown RBP7.17□□□□□ -1.26
CUX1-220ENST00000607092 CLEC1BQ9P126 229 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 PCDHA6Q9UN73 950 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 PCDHA8Q9Y5H6 950 aa7.17□□□□□ -1.26
CUX1-220ENST00000607092 WDFY4Q6ZS81 3184 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 BACH1O14867 736 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 LINC01565O15544 149 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 PRC1O43663 620 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 ATP9AO75110 1047 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 FGF18O76093 207 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 ZNF76P36508 570 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MTHFRP42898 656 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 CRYBB1P53674 252 aaPredicted RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 ACTR2P61160 394 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MTMR3Q13615 1198 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 CAMK1Q14012 370 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 GIT2Q14161 759 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 PLCB4Q15147 1175 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 DUSP6Q16828 381 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 SLC35G1Q2M3R5 365 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 PAN2Q504Q3 1202 aaKnown RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 TTC22Q5TAA0 569 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 RNF20Q5VTR2 975 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MIS18BP1Q6P0N0 1132 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MTHFD1LQ6UB35 978 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 RBM23Q86U06 439 aaKnown RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 MB21D2Q8IYB1 491 aaPredicted RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 LRRC43Q8N309 656 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 CCDC12Q8WUD4 166 aaPredicted RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 PIBF1Q8WXW3 757 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 SUSD6Q92537 303 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MRPS27Q92552 414 aaKnown RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 CASP10Q92851 521 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MAP4K1Q92918 833 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 FAM167AQ96KS9 214 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 RIPOR3Q96MK2 946 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 ZNF558Q96NG5 402 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MAP7D2Q96T17 732 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 MRPL9Q9BYD2 267 aaKnown RBP7.16□□□□□ -1.26
CUX1-220ENST00000607092 TMEM117Q9H0C3 514 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 LY9Q9HBG7 655 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 ENTPD7Q9NQZ7 604 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 DZANK1Q9NVP4 752 aa7.16□□□□□ -1.26
CUX1-220ENST00000607092 TMEM260Q9NX78 707 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms