RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 RBM23Q86U06 439 aaKnown RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 RAB11FIP4Q86YS3 637 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 SUGP1Q8IWZ8 645 aaKnown RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 THNSL1Q8IYQ7 743 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 ABI1Q8IZP0 508 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 ATP8B4Q8TF62 1192 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 PCYT2Q99447 389 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 CDCA3Q99618 268 aaPredicted RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 ADAM2Q99965 735 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 LRRC2Q9BYS8 371 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 ANO3Q9BYT9 981 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 LSG1Q9H089 658 aaKnown RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 RGS18Q9NS28 235 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 BARHL2Q9NY43 387 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 NAP1L2Q9ULW6 460 aaPredicted RBP10.89□□□□□ -0.67
VRK3-224ENST00000601849 NLRC5Q86WI3 1866 aa10.89□□□□□ -0.67
VRK3-224ENST00000601849 TBKBP1A7MCY6 615 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 DDX39AO00148 427 aaKnown RBP10.88□□□□□ -0.67
VRK3-224ENST00000601849 MAGEB2O15479 319 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 LINC01565O15544 149 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 TBX10O75333 385 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 LINC00271P0C7V0 271 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 GNA11P29992 359 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 SREBF1P36956 1147 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 SWSAP1Q6NVH7 229 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 APOA5Q6Q788 366 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 ABHD15Q6UXT9 468 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 PLA2G4DQ86XP0 818 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 SMAP1Q8IYB5 467 aaPredicted RBP10.88□□□□□ -0.67
VRK3-224ENST00000601849 CRIPAKQ8N1N5 446 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 METTL13Q8N6R0 699 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 CYP2W1Q8TAV3 490 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 TRAPPC12Q8WVT3 735 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 BBXQ8WY36 941 aaPredicted RBP10.88□□□□□ -0.67
VRK3-224ENST00000601849 PBXIP1Q96AQ6 731 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 ZNF577Q9BSK1 485 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 C6orf50Q9HD87 102 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 TLR9Q9NR96 1032 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 TMEM260Q9NX78 707 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 MUTYHQ9UIF7 546 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 ST3GAL5Q9UNP4 418 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 SAMM50Q9Y512 469 aa10.88□□□□□ -0.67
VRK3-224ENST00000601849 C5orf42Q9H799 3197 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 DOCK5Q9H7D0 1870 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 IGKV6D-21A0A0A0MT36 114 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 GOLGA8AA7E2F4 631 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 GOLGA8BA8MQT2 603 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 IPO5O00410 1097 aaKnown RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 PSAPP07602 524 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 LAG3P18627 525 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 DNAJB1P25685 340 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 GTF2F1P35269 517 aaKnown RBP eCLIP10.87□□□□□ -0.67
VRK3-224ENST00000601849 MRE11P49959 708 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 SETQ01105 290 aaPredicted RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 ITGB3BPQ13352 177 aaPredicted RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 CAMK1Q14012 370 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 TMEM266Q2M3C6 531 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 ZNF746Q6NUN9 644 aaPredicted RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 HFE2Q6ZVN8 426 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 BMP8AQ7Z5Y6 402 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 KIAA0319LQ8IZA0 1049 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 TMEM87AQ8NBN3 555 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 SMRP1Q8NCR6 262 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 BICD2Q8TD16 824 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 LINC01599Q8WXQ3 324 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 ZBTB10Q96DT7 871 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 PGBD1Q96JS3 809 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 MSLNLQ96KJ4 702 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 FAM167AQ96KS9 214 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 FBXL18Q96ME1 805 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 MAP7D2Q96T17 732 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 PHF7Q9BWX1 381 aaPredicted RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 IRF2BPLQ9H1B7 796 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 ELAC1Q9H777 363 aaKnown RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 NGRNQ9NPE2 291 aaKnown RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 NRBP2Q9NSY0 501 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 TYW1Q9NV66 732 aaKnown RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 TMEM161AQ9NX61 479 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 NOC2LQ9Y3T9 749 aaKnown RBP10.87□□□□□ -0.67
VRK3-224ENST00000601849 PCDHA10Q9Y5I2 948 aa10.87□□□□□ -0.67
VRK3-224ENST00000601849 BRWD1Q9NSI6 2320 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 TTC3P53804 2025 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 KLF18A0A0U1RQI7 1052 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 CARNS1A5YM72 827 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 FGF18O76093 207 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 CYP3A4P08684 503 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 PPM1AP35813 382 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 RCAN1P53805 252 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 CDC42EP1Q00587 391 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 NHLH1Q02575 133 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 JAKMIP3Q5VZ66 844 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 TRIM67Q6ZTA4 783 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 ZBTB33Q86T24 672 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 RPGRIP1Q96KN7 1286 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 TMX1Q9H3N1 280 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 ERVK-5Q9HDB9 667 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 CLEC1BQ9P126 229 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 LZTS1Q9Y250 596 aa10.86□□□□□ -0.67
VRK3-224ENST00000601849 WDFY4Q6ZS81 3184 aa10.85□□□□□ -0.67
VRK3-224ENST00000601849 CNTNAP5Q8WYK1 1306 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms