RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 IGLV3-22A0A075B6J6 115 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 IGKV6D-21A0A0A0MT36 114 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 DENND3A2RUS2 1198 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 C5orf67F2Z3F1 127 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 CYP3A4P08684 503 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 GNA11P29992 359 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 GTF2F1P35269 517 aaKnown RBP eCLIP19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 KIAA0319LQ8IZA0 1049 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 NEK9Q8TD19 979 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 CLP1Q92989 425 aaKnown RBP19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 ZMYND12Q9H0C1 365 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 TBC1D22BQ9NU19 505 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 VPS54Q9P1Q0 977 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 GABBR1Q9UBS5 961 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 PCDHB7Q9Y5E2 793 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 SQORQ9Y6N5 450 aa19.94■□□□□ 0.78
SHKBP1-223ENST00000600552 MGEA5O60502 916 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 VTNP04004 478 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 PSAPP07602 524 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 LINC00271P0C7V0 271 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 ATP4AP20648 1035 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 HYAL1Q12794 435 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 KIZQ2M2Z5 673 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 PUS10Q3MIT2 529 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 CMTR2Q8IYT2 770 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 KCNB2Q92953 911 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 OSMRQ99650 979 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 ADAM2Q99965 735 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 LARP6Q9BRS8 491 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 LMAN2LQ9H0V9 348 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 PLAGL2Q9UPG8 496 aa19.93■□□□□ 0.78
SHKBP1-223ENST00000600552 ESYT2A0FGR8 921 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 LINC01565O15544 149 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 CHMP2AO43633 222 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 PSMA5P28066 241 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 NLRP5P59047 1200 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 KLHL23Q8NBE8 558 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 BICD2Q8TD16 824 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 ZNF668Q96K58 619 aaPredicted RBP19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 ERVK-5Q9HDB9 667 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 ST3GAL5Q9UNP4 418 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 FAM50BQ9Y247 325 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 PCDHA10Q9Y5I2 948 aa19.92■□□□□ 0.78
SHKBP1-223ENST00000600552 COL4A6Q14031 1691 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 TBKBP1A7MCY6 615 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 ITGB1P05556 798 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 CLCN3P51790 818 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 SETQ01105 290 aaPredicted RBP19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 DLX2Q07687 328 aaPredicted RBP19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 MCTP2Q6DN12 878 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 ZNF746Q6NUN9 644 aaPredicted RBP19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 RBM23Q86U06 439 aaKnown RBP19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 CCDC148Q8NFR7 591 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 MICAL1Q8TDZ2 1067 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 TMEM40Q8WWA1 233 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 BBXQ8WY36 941 aaPredicted RBP19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 GJA10Q969M2 543 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 FAM122AQ96E09 287 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 PLVAPQ9BX97 442 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 ATG2AQ2TAZ0 1938 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 KDM3AQ9Y4C1 1321 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 COL1A2P08123 1366 aa19.91■□□□□ 0.78
SHKBP1-223ENST00000600552 KIAA1671Q9BY89 1806 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 ZBTB42B2RXF5 422 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 NCK2O43639 380 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 REC8O95072 547 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 C22orf31O95567 290 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 DNAJB1P25685 340 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 PDIA3P30101 505 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 LTBRP36941 435 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 SARSP49591 514 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 FAM102BQ5T8I3 360 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 SPPL3Q8TCT6 385 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 CRYGNQ8WXF5 182 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 AKT3Q9Y243 479 aa19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 MAFBQ9Y5Q3 323 aaPredicted RBP19.9■□□□□ 0.78
SHKBP1-223ENST00000600552 PI4K2BG5E9Z4 385 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 GPR182O15218 404 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 MMP1P03956 469 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 IRS1P35568 1242 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 NDUFV1P49821 464 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 STK3Q13188 491 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 ODR4Q5SWX8 454 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 SMAP1Q8IYB5 467 aaPredicted RBP19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 LRRC71Q8N4P6 559 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 POF1BQ8WVV4 589 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 RNF26Q9BY78 433 aaPredicted RBP19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 PCDHGC5Q9Y5F6 944 aa19.89■□□□□ 0.77
SHKBP1-223ENST00000600552 MSH4O15457 936 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 IFNAR1P17181 557 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 CRYBB1P53674 252 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 NLRP11P59045 1033 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 SSRP1Q08945 709 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 CAMK1Q14012 370 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 NTRK3Q16288 839 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 EFCAB12Q6NXP0 572 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 ADGRD2Q7Z7M1 963 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 FAM228AQ86W67 206 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 TRIM22Q8IYM9 498 aa19.88■□□□□ 0.77
SHKBP1-223ENST00000600552 CRIPAKQ8N1N5 446 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms