RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 WDR64B1ANS9 1081 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 ADAMTS3O15072 1205 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 RPS6KA5O75582 802 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 IBSPP21815 317 aaPredicted RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 CIITAP33076 1130 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 EVCP57679 992 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 TOB2Q14106 344 aaPredicted RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 TMEM266Q2M3C6 531 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 PAN2Q504Q3 1202 aaKnown RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 TCEAL5Q5H9L2 206 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 FAM43BQ6ZT52 329 aaPredicted RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 CMTR2Q8IYT2 770 aaKnown RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 METTL13Q8N6R0 699 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 CLP1Q92989 425 aaKnown RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 FAM167AQ96KS9 214 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 PLVAPQ9BX97 442 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 C1QTNF1Q9BXJ1 281 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 RNF216Q9NWF9 866 aaPredicted RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 GABBR1Q9UBS5 961 aa11.09□□□□□ -0.63
VRK3-216ENST00000599342 MAFBQ9Y5Q3 323 aaPredicted RBP11.09□□□□□ -0.63
VRK3-216ENST00000599342 GPR182O15218 404 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 NCK2O43639 380 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 GAS7O60861 476 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 CSPG5O95196 566 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 DEXIO95424 95 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 C22orf31O95567 290 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 ATP4AP20648 1035 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 SARSP49591 514 aaKnown RBP11.08□□□□□ -0.64
VRK3-216ENST00000599342 USP11P51784 963 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 PUS10Q3MIT2 529 aaKnown RBP11.08□□□□□ -0.64
VRK3-216ENST00000599342 RTN4RL1Q86UN2 441 aaPredicted RBP11.08□□□□□ -0.64
VRK3-216ENST00000599342 KIAA0319LQ8IZA0 1049 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 PABPC5Q96DU9 382 aaKnown RBP11.08□□□□□ -0.64
VRK3-216ENST00000599342 MAP7D2Q96T17 732 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 PPP1R16BQ96T49 567 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 TEKT3Q9BXF9 490 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 UPF3BQ9BZI7 483 aaKnown RBP11.08□□□□□ -0.64
VRK3-216ENST00000599342 DISC1Q9NRI5 854 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 C1orf112Q9NSG2 853 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 PCDHA4Q9UN74 947 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 FAM50BQ9Y247 325 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 PCDHB7Q9Y5E2 793 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 MRPL42Q9Y6G3 142 aaKnown RBP11.08□□□□□ -0.64
VRK3-216ENST00000599342 TRANK1O15050 2925 aa11.08□□□□□ -0.64
VRK3-216ENST00000599342 ZBTB42B2RXF5 422 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 H3BQ06 376 aaPredicted RBP11.07□□□□□ -0.64
VRK3-216ENST00000599342 GRM6O15303 877 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 MAGEB2O15479 319 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 CHMP2AO43633 222 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 MMP1P03956 469 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 VTNP04004 478 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 OATP04181 439 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 LINC00271P0C7V0 271 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 COL9A1P20849 921 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 TMOD1P28289 359 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 SFNP31947 248 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 JAK3P52333 1124 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 CRYBB1P53674 252 aaPredicted RBP11.07□□□□□ -0.64
VRK3-216ENST00000599342 PRKCEQ02156 737 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 STK3Q13188 491 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 KIZQ2M2Z5 673 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 NAALADL2Q58DX5 795 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 LRCH2Q5VUJ6 765 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 PTCRAQ6ISU1 281 aaPredicted RBP11.07□□□□□ -0.64
VRK3-216ENST00000599342 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.07□□□□□ -0.64
VRK3-216ENST00000599342 TBCKQ8TEA7 893 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 TMEM40Q8WWA1 233 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 P2RX5Q93086 422 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 PPP2R3CQ969Q6 453 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 LENG9Q96B70 501 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 ZNF274Q96GC6 653 aaPredicted RBP11.07□□□□□ -0.64
VRK3-216ENST00000599342 RIT2Q99578 217 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 OSMRQ99650 979 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 ADAM2Q99965 735 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 TM6SF1Q9BZW5 370 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 TMX1Q9H3N1 280 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 ERVK-5Q9HDB9 667 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 NRBP2Q9NSY0 501 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 PDRG1Q9NUG6 133 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 CLDND1Q9NY35 253 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 ST3GAL5Q9UNP4 418 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 AKT3Q9Y243 479 aa11.07□□□□□ -0.64
VRK3-216ENST00000599342 NOC2LQ9Y3T9 749 aaKnown RBP11.07□□□□□ -0.64
VRK3-216ENST00000599342 TTC3P53804 2025 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 MSH4O15457 936 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 CDKL5O76039 1030 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 IL9P15248 144 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 SSTR3P32745 418 aaPredicted RBP11.06□□□□□ -0.64
VRK3-216ENST00000599342 CLCN3P51790 818 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 SPOUT1Q5T280 376 aaKnown RBP11.06□□□□□ -0.64
VRK3-216ENST00000599342 GALNT17Q6IS24 598 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 EFCAB12Q6NXP0 572 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 SLC24A5Q71RS6 500 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 BLIDQ8IZY5 108 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 FAM177A1Q8N128 213 aaPredicted RBP11.06□□□□□ -0.64
VRK3-216ENST00000599342 CRIPAKQ8N1N5 446 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 NEK9Q8TD19 979 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 SCLT1Q96NL6 688 aa11.06□□□□□ -0.64
VRK3-216ENST00000599342 LARP6Q9BRS8 491 aaKnown RBP11.06□□□□□ -0.64
VRK3-216ENST00000599342 CDHR5Q9HBB8 845 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms