RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CATSPER3Q86XQ3 398 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 C4orf19Q8IY42 314 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 IGSF22Q8N9C0 903 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 FAM167AQ96KS9 214 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 MMTAG2Q9BU76 263 aaKnown RBP15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 CDHR5Q9HBB8 845 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 COL1A2P08123 1366 aa15.94■□□□□ 0.14
SHKBP1-217ENST00000598558 SMIM35A0A1B0GVV1 85 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 RSPH10B2B2RC85 870 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 LYPLA2O95372 231 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 RSPH10BP0C881 870 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 ZSCAN22P10073 491 aaPredicted RBP15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 PRPHP41219 470 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 TMEM62Q0P6H9 643 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 PPIGQ13427 754 aaKnown RBP eCLIP15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 DRP2Q13474 957 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 MTERF2Q49AM1 385 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 LRRC71Q8N4P6 559 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 USP28Q96RU2 1077 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 ZSWIM4Q9H7M6 989 aa15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 SEPT9Q9UHD8 586 aaPredicted RBP15.93■□□□□ 0.14
SHKBP1-217ENST00000598558 IGKV6-21A0A0C4DH24 114 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 CXCL10P02778 98 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 CLCN3P51790 818 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 CEBPZQ03701 1054 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 PDIA5Q14554 519 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 TAF2Q6P1X5 1199 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 DTHD1Q6ZMT9 781 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 CCDC155Q8N6L0 562 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 PIGOQ8TEQ8 1089 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 TNPO1Q92973 898 aaKnown RBP15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 CHAMP1Q96JM3 812 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 POLR3CQ9BUI4 534 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 ZSCAN16Q9H4T2 348 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 CXXC1Q9P0U4 656 aaPredicted RBP15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 LRWD1Q9UFC0 647 aa15.92■□□□□ 0.14
SHKBP1-217ENST00000598558 RANBP2P49792 3224 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 LAD1O00515 517 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 YWHABP31946 246 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 FOXD4L6Q3SYB3 417 aaPredicted RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 HABP4Q5JVS0 413 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 RASIP1Q5U651 963 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 EFCAB12Q6NXP0 572 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 FOXD4L3Q6VB84 417 aaPredicted RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 OTOP2Q7RTS6 562 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 TDHQ8IZJ6 230 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 PPP1R16BQ96T49 567 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 CYP26B1Q9NR63 512 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 TFIP11Q9UBB9 837 aaKnown RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 CDY2AQ9Y6F7 541 aa15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 TRIP12Q14669 1992 aaPredicted RBP15.91■□□□□ 0.14
SHKBP1-217ENST00000598558 VWA3AA6NCI4 1184 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 SOX1O00570 391 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 MAFO75444 373 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 BRD1O95696 1058 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 F13A1P00488 732 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 FGBP02675 491 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 VTNP04004 478 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 RPA1P27694 616 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 MARCKSP29966 332 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 MRPS6P82932 125 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 FAM109BQ6ICB4 259 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 POTEGQ6S5H5 508 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 METTL13Q8N6R0 699 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 ZNF668Q96K58 619 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 CEP170P1Q96L14 293 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 AGO3Q9H9G7 860 aaKnown RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 SUGCTQ9HAC7 445 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 TUFT1Q9NNX1 390 aa15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 BMP2KQ9NSY1 1161 aaPredicted RBP15.9■□□□□ 0.14
SHKBP1-217ENST00000598558 MAGEB2O15479 319 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 CAND2O75155 1236 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 GPR32O75388 356 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 RFC2P35250 354 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 CCT6AP40227 531 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 TBC1D8BQ0IIM8 1120 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 BECN1Q14457 450 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 LPIN1Q14693 890 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 TMEM266Q2M3C6 531 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 XKR9Q5GH70 373 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 ARL6IP4Q66PJ3 421 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 USP49Q70CQ1 688 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 KCNK18Q7Z418 384 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 RPUSD2Q8IZ73 545 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 DBF4BQ8NFT6 615 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 NEK9Q8TD19 979 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 LRRC15Q8TF66 581 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 TMEM40Q8WWA1 233 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 HERVK_113Q902F9 699 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 PNMA5Q96PV4 448 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 CELF4Q9BZC1 486 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 ADAMTS10Q9H324 1103 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 DHX33Q9H6R0 707 aaKnown RBP15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 XPNPEP1Q9NQW7 623 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 ANKEF1Q9NU02 776 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 FBXO2Q9UK22 296 aaPredicted RBP15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 CEP131Q9UPN4 1083 aa15.89■□□□□ 0.13
SHKBP1-217ENST00000598558 DKC1O60832 514 aaKnown RBP eCLIP15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 GHRP10912 638 aa15.88■□□□□ 0.13
SHKBP1-217ENST00000598558 DDIT3P35638 169 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms